Hb_002400_060

Information

Type -
Description -
Location Contig2400: 64462-66670
Sequence    

Annotation

kegg
ID pop:POPTR_0018s01790g
description POPTRDRAFT_835815; clathrin assembly family protein
nr
ID XP_012076553.1
description PREDICTED: putative clathrin assembly protein At2g25430 [Jatropha curcas]
swissprot
ID Q8LF20
description Putative clathrin assembly protein At2g25430 OS=Arabidopsis thaliana GN=At2g25430 PE=1 SV=2
trembl
ID A0A067KBI9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07157 PE=4 SV=1
Gene Ontology
ID GO:0030136
description clathrin assembly protein at2g25430

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25149: 64213-66878 , PASA_asmbl_25150: 64213-66593
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002400_060 0.0 - - PREDICTED: putative clathrin assembly protein At2g25430 [Jatropha curcas]
2 Hb_001801_020 0.0700992791 - - PREDICTED: xylosyltransferase 1 [Jatropha curcas]
3 Hb_002311_130 0.0765269799 - - PREDICTED: importin subunit alpha-2 isoform X2 [Jatropha curcas]
4 Hb_001210_040 0.0797807953 - - PREDICTED: molybdate transporter 2 [Jatropha curcas]
5 Hb_009674_050 0.0823921067 - - Endosomal P24A protein precursor, putative [Ricinus communis]
6 Hb_033642_060 0.0896258746 - - PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
7 Hb_000265_140 0.0935518438 - - PREDICTED: transmembrane 9 superfamily member 12 [Jatropha curcas]
8 Hb_002817_060 0.0942648606 - - PREDICTED: coatomer subunit alpha-1 [Jatropha curcas]
9 Hb_001998_150 0.0944570772 - - hypothetical protein JCGZ_09140 [Jatropha curcas]
10 Hb_001029_040 0.0964635394 - - PREDICTED: uncharacterized protein LOC105641058 [Jatropha curcas]
11 Hb_183086_030 0.0965608092 - - GTPase-activating protein GYP7 [Gossypium arboreum]
12 Hb_000809_250 0.0967900796 - - PREDICTED: uncharacterized protein LOC105639683 [Jatropha curcas]
13 Hb_003746_010 0.0998159992 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002603_040 0.1000681295 - - PREDICTED: phosphoinositide phospholipase C 2-like [Jatropha curcas]
15 Hb_005914_040 0.1032799857 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
16 Hb_005000_090 0.1036199222 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]
17 Hb_138585_080 0.1081784353 - - PREDICTED: uncharacterized protein LOC105648741 [Jatropha curcas]
18 Hb_001998_220 0.1081872148 - - PREDICTED: isoamylase 1, chloroplastic [Jatropha curcas]
19 Hb_007897_030 0.1083731808 - - PREDICTED: serine/threonine-protein kinase-like protein CCR2 [Jatropha curcas]
20 Hb_007313_040 0.1083809389 - - hypothetical protein JCGZ_23401 [Jatropha curcas]

Gene co-expression network

sample Hb_002400_060 Hb_002400_060 Hb_001801_020 Hb_001801_020 Hb_002400_060--Hb_001801_020 Hb_002311_130 Hb_002311_130 Hb_002400_060--Hb_002311_130 Hb_001210_040 Hb_001210_040 Hb_002400_060--Hb_001210_040 Hb_009674_050 Hb_009674_050 Hb_002400_060--Hb_009674_050 Hb_033642_060 Hb_033642_060 Hb_002400_060--Hb_033642_060 Hb_000265_140 Hb_000265_140 Hb_002400_060--Hb_000265_140 Hb_001801_020--Hb_033642_060 Hb_183086_030 Hb_183086_030 Hb_001801_020--Hb_183086_030 Hb_022250_010 Hb_022250_010 Hb_001801_020--Hb_022250_010 Hb_126976_010 Hb_126976_010 Hb_001801_020--Hb_126976_010 Hb_002817_060 Hb_002817_060 Hb_001801_020--Hb_002817_060 Hb_002805_090 Hb_002805_090 Hb_002311_130--Hb_002805_090 Hb_007313_040 Hb_007313_040 Hb_002311_130--Hb_007313_040 Hb_001998_220 Hb_001998_220 Hb_002311_130--Hb_001998_220 Hb_001473_170 Hb_001473_170 Hb_002311_130--Hb_001473_170 Hb_005000_090 Hb_005000_090 Hb_002311_130--Hb_005000_090 Hb_021297_020 Hb_021297_020 Hb_001210_040--Hb_021297_020 Hb_003340_010 Hb_003340_010 Hb_001210_040--Hb_003340_010 Hb_027445_020 Hb_027445_020 Hb_001210_040--Hb_027445_020 Hb_001210_040--Hb_001801_020 Hb_001210_040--Hb_126976_010 Hb_003746_010 Hb_003746_010 Hb_009674_050--Hb_003746_010 Hb_005348_110 Hb_005348_110 Hb_009674_050--Hb_005348_110 Hb_009252_010 Hb_009252_010 Hb_009674_050--Hb_009252_010 Hb_030959_010 Hb_030959_010 Hb_009674_050--Hb_030959_010 Hb_005116_140 Hb_005116_140 Hb_009674_050--Hb_005116_140 Hb_033642_060--Hb_183086_030 Hb_033642_060--Hb_022250_010 Hb_000359_190 Hb_000359_190 Hb_033642_060--Hb_000359_190 Hb_001246_130 Hb_001246_130 Hb_033642_060--Hb_001246_130 Hb_000701_030 Hb_000701_030 Hb_000265_140--Hb_000701_030 Hb_002603_040 Hb_002603_040 Hb_000265_140--Hb_002603_040 Hb_012194_060 Hb_012194_060 Hb_000265_140--Hb_012194_060 Hb_000085_260 Hb_000085_260 Hb_000265_140--Hb_000085_260 Hb_001754_020 Hb_001754_020 Hb_000265_140--Hb_001754_020 Hb_021576_070 Hb_021576_070 Hb_000265_140--Hb_021576_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.43649 19.9635 11.7633 34.4206 9.88454 9.06989
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.34559 4.66041 12.0434 17.5693 35.4993

CAGE analysis