Hb_009252_010

Information

Type -
Description -
Location Contig9252: 21653-24494
Sequence    

Annotation

kegg
ID rcu:RCOM_1510760
description kinesin light chain, putative
nr
ID XP_012080075.1
description PREDICTED: kinesin light chain [Jatropha curcas]
swissprot
ID Q7Z494
description Nephrocystin-3 OS=Homo sapiens GN=NPHP3 PE=1 SV=1
trembl
ID A0A067K4G0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11482 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62614: 21778-25209
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009252_010 0.0 - - PREDICTED: kinesin light chain [Jatropha curcas]
2 Hb_030959_010 0.0901115025 - - cullin, putative [Ricinus communis]
3 Hb_009674_050 0.0928322851 - - Endosomal P24A protein precursor, putative [Ricinus communis]
4 Hb_000120_860 0.1001947768 - - nucellin, putative [Ricinus communis]
5 Hb_005228_040 0.1013067166 - - PREDICTED: uncharacterized protein At4g06598-like [Jatropha curcas]
6 Hb_000684_390 0.1119495344 - - PREDICTED: mediator of RNA polymerase II transcription subunit 4 [Jatropha curcas]
7 Hb_005348_110 0.1119990067 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
8 Hb_000417_170 0.1139252855 - - PREDICTED: uncharacterized protein LOC105649689 [Jatropha curcas]
9 Hb_130589_010 0.1185134074 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
10 Hb_000270_660 0.1207882584 - - purine permease, putative [Ricinus communis]
11 Hb_003746_010 0.1232866447 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001009_260 0.1254474658 - - PREDICTED: uncharacterized aarF domain-containing protein kinase 1 isoform X1 [Jatropha curcas]
13 Hb_001628_120 0.1254489182 - - putative ascorbate peroxidase, partial [Taraxacum brevicorniculatum]
14 Hb_000920_310 0.1271811062 - - Ran GTPase binding protein, putative [Ricinus communis]
15 Hb_000062_400 0.128554987 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005116_140 0.1300113634 - - PREDICTED: RAN GTPase-activating protein 1 [Jatropha curcas]
17 Hb_000011_220 0.1321658247 - - PREDICTED: uncharacterized protein LOC105631313 [Jatropha curcas]
18 Hb_000836_060 0.1328730854 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-2 [Jatropha curcas]
19 Hb_000521_090 0.1339101984 - - PREDICTED: RING-H2 finger protein ATL5 isoform X1 [Jatropha curcas]
20 Hb_002164_020 0.1343585146 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_009252_010 Hb_009252_010 Hb_030959_010 Hb_030959_010 Hb_009252_010--Hb_030959_010 Hb_009674_050 Hb_009674_050 Hb_009252_010--Hb_009674_050 Hb_000120_860 Hb_000120_860 Hb_009252_010--Hb_000120_860 Hb_005228_040 Hb_005228_040 Hb_009252_010--Hb_005228_040 Hb_000684_390 Hb_000684_390 Hb_009252_010--Hb_000684_390 Hb_005348_110 Hb_005348_110 Hb_009252_010--Hb_005348_110 Hb_005116_140 Hb_005116_140 Hb_030959_010--Hb_005116_140 Hb_030959_010--Hb_000120_860 Hb_030959_010--Hb_009674_050 Hb_000417_170 Hb_000417_170 Hb_030959_010--Hb_000417_170 Hb_002611_010 Hb_002611_010 Hb_030959_010--Hb_002611_010 Hb_003746_010 Hb_003746_010 Hb_009674_050--Hb_003746_010 Hb_002400_060 Hb_002400_060 Hb_009674_050--Hb_002400_060 Hb_009674_050--Hb_005348_110 Hb_009674_050--Hb_005116_140 Hb_000270_660 Hb_000270_660 Hb_000120_860--Hb_000270_660 Hb_001009_260 Hb_001009_260 Hb_000120_860--Hb_001009_260 Hb_000000_310 Hb_000000_310 Hb_000120_860--Hb_000000_310 Hb_000120_860--Hb_005116_140 Hb_003682_070 Hb_003682_070 Hb_000120_860--Hb_003682_070 Hb_001628_120 Hb_001628_120 Hb_005228_040--Hb_001628_120 Hb_183963_010 Hb_183963_010 Hb_005228_040--Hb_183963_010 Hb_000984_210 Hb_000984_210 Hb_005228_040--Hb_000984_210 Hb_003226_250 Hb_003226_250 Hb_005228_040--Hb_003226_250 Hb_000834_080 Hb_000834_080 Hb_005228_040--Hb_000834_080 Hb_000920_310 Hb_000920_310 Hb_000684_390--Hb_000920_310 Hb_000684_390--Hb_000000_310 Hb_000684_390--Hb_001628_120 Hb_000684_390--Hb_003682_070 Hb_000107_250 Hb_000107_250 Hb_000684_390--Hb_000107_250 Hb_001017_030 Hb_001017_030 Hb_000684_390--Hb_001017_030 Hb_005348_110--Hb_003746_010 Hb_001216_110 Hb_001216_110 Hb_005348_110--Hb_001216_110 Hb_000011_220 Hb_000011_220 Hb_005348_110--Hb_000011_220 Hb_010175_030 Hb_010175_030 Hb_005348_110--Hb_010175_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.69752 17.9221 20.6394 64.5777 9.5873 11.4039
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.00322 10.613 21.8961 17.7363 93.5986

CAGE analysis