Hb_010175_030

Information

Type -
Description -
Location Contig10175: 40132-42324
Sequence    

Annotation

kegg
ID rcu:RCOM_0338880
description transcription factor, putative
nr
ID XP_012079481.1
description PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KJY7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12595 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00870: 39301-40762 , PASA_asmbl_00871: 39352-40765 , PASA_asmbl_00872: 40912-42539
cDNA
(Sanger)
(ID:Location)		 008_O13.ab1: 39316-40525

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010175_030 0.0 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
2 Hb_005348_110 0.1198451265 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
3 Hb_000390_030 0.1266702997 - - hypothetical protein ZEAMMB73_364791 [Zea mays]
4 Hb_000011_220 0.1267185231 - - PREDICTED: uncharacterized protein LOC105631313 [Jatropha curcas]
5 Hb_009674_050 0.1279441142 - - Endosomal P24A protein precursor, putative [Ricinus communis]
6 Hb_009252_010 0.1349503827 - - PREDICTED: kinesin light chain [Jatropha curcas]
7 Hb_177343_010 0.1370292424 - - PREDICTED: uncharacterized protein LOC105650963 [Jatropha curcas]
8 Hb_001210_040 0.1426546394 - - PREDICTED: molybdate transporter 2 [Jatropha curcas]
9 Hb_059741_010 0.1440062209 - - PREDICTED: cellulose synthase A catalytic subunit 1 [UDP-forming] [Jatropha curcas]
10 Hb_000270_660 0.1455585786 - - purine permease, putative [Ricinus communis]
11 Hb_010288_060 0.1459041087 - - PREDICTED: dnaJ protein ERDJ3B [Jatropha curcas]
12 Hb_006277_010 0.1459395474 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Gossypium raimondii]
13 Hb_002164_020 0.1517052609 - - conserved hypothetical protein [Ricinus communis]
14 Hb_021495_020 0.1523936547 - - chitinase, putative [Ricinus communis]
15 Hb_000014_040 0.1540018414 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000120_860 0.1554474418 - - nucellin, putative [Ricinus communis]
17 Hb_001009_260 0.158473204 - - PREDICTED: uncharacterized aarF domain-containing protein kinase 1 isoform X1 [Jatropha curcas]
18 Hb_003746_010 0.1589066398 - - conserved hypothetical protein [Ricinus communis]
19 Hb_007416_210 0.1595092404 - - PREDICTED: coatomer subunit beta-1 [Jatropha curcas]
20 Hb_000390_050 0.1613029733 - - PREDICTED: GPCR-type G protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_010175_030 Hb_010175_030 Hb_005348_110 Hb_005348_110 Hb_010175_030--Hb_005348_110 Hb_000390_030 Hb_000390_030 Hb_010175_030--Hb_000390_030 Hb_000011_220 Hb_000011_220 Hb_010175_030--Hb_000011_220 Hb_009674_050 Hb_009674_050 Hb_010175_030--Hb_009674_050 Hb_009252_010 Hb_009252_010 Hb_010175_030--Hb_009252_010 Hb_177343_010 Hb_177343_010 Hb_010175_030--Hb_177343_010 Hb_005348_110--Hb_009674_050 Hb_003746_010 Hb_003746_010 Hb_005348_110--Hb_003746_010 Hb_001216_110 Hb_001216_110 Hb_005348_110--Hb_001216_110 Hb_005348_110--Hb_009252_010 Hb_005348_110--Hb_000011_220 Hb_000529_140 Hb_000529_140 Hb_000390_030--Hb_000529_140 Hb_010288_060 Hb_010288_060 Hb_000390_030--Hb_010288_060 Hb_008511_140 Hb_008511_140 Hb_000390_030--Hb_008511_140 Hb_000390_030--Hb_009252_010 Hb_000495_080 Hb_000495_080 Hb_000390_030--Hb_000495_080 Hb_000011_220--Hb_009674_050 Hb_002164_020 Hb_002164_020 Hb_000011_220--Hb_002164_020 Hb_000011_220--Hb_003746_010 Hb_059741_010 Hb_059741_010 Hb_000011_220--Hb_059741_010 Hb_009674_050--Hb_003746_010 Hb_002400_060 Hb_002400_060 Hb_009674_050--Hb_002400_060 Hb_009674_050--Hb_009252_010 Hb_030959_010 Hb_030959_010 Hb_009674_050--Hb_030959_010 Hb_005116_140 Hb_005116_140 Hb_009674_050--Hb_005116_140 Hb_009252_010--Hb_030959_010 Hb_000120_860 Hb_000120_860 Hb_009252_010--Hb_000120_860 Hb_005228_040 Hb_005228_040 Hb_009252_010--Hb_005228_040 Hb_000684_390 Hb_000684_390 Hb_009252_010--Hb_000684_390 Hb_000270_660 Hb_000270_660 Hb_177343_010--Hb_000270_660 Hb_163145_030 Hb_163145_030 Hb_177343_010--Hb_163145_030 Hb_177343_010--Hb_059741_010 Hb_177343_010--Hb_002164_020 Hb_011310_050 Hb_011310_050 Hb_177343_010--Hb_011310_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.84758 10.4534 25.5016 67.944 23.7414 16.9036
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.6415 9.83305 37.4115 38.1504 98.3257

CAGE analysis