Hb_163145_030

Information

Type -
Description -
Location Contig163145: 32730-34877
Sequence    

Annotation

kegg
ID pop:POPTR_0003s08800g
description hypothetical protein
nr
ID XP_012074655.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g46580, chloroplastic [Jatropha curcas]
swissprot
ID Q9LS25
description Pentatricopeptide repeat-containing protein At5g46580, chloroplastic OS=Arabidopsis thaliana GN=At5g46580 PE=2 SV=1
trembl
ID A0A067KLE7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10617 PE=4 SV=1
Gene Ontology
ID GO:0005622
description pentatricopeptide repeat-containing protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14864: 34797-35016
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_163145_030 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g46580, chloroplastic [Jatropha curcas]
2 Hb_005914_210 0.0905921399 - - PREDICTED: uncharacterized protein LOC105638411 [Jatropha curcas]
3 Hb_001009_260 0.1094481971 - - PREDICTED: uncharacterized aarF domain-containing protein kinase 1 isoform X1 [Jatropha curcas]
4 Hb_130589_010 0.1117686551 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
5 Hb_003025_140 0.119724412 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000640_260 0.1213972435 - - PREDICTED: pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Jatropha curcas]
7 Hb_177343_010 0.1251863221 - - PREDICTED: uncharacterized protein LOC105650963 [Jatropha curcas]
8 Hb_000815_230 0.1265102472 - - conserved hypothetical protein [Ricinus communis]
9 Hb_021409_190 0.1281082722 - - PREDICTED: luminal-binding protein 5-like [Jatropha curcas]
10 Hb_010757_030 0.1315483302 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_000537_070 0.1367247811 - - PREDICTED: pentatricopeptide repeat-containing protein At5g25630 [Jatropha curcas]
12 Hb_001348_090 0.1373140503 - - PREDICTED: long chain acyl-CoA synthetase 9, chloroplastic [Jatropha curcas]
13 Hb_000878_030 0.138862646 - - calcium-dependent protein kinase, putative [Ricinus communis]
14 Hb_114893_040 0.1395018714 transcription factor TF Family: mTERF hypothetical protein JCGZ_10155 [Jatropha curcas]
15 Hb_001109_160 0.141560981 - - DNA binding protein, putative [Ricinus communis]
16 Hb_000120_860 0.1417054351 - - nucellin, putative [Ricinus communis]
17 Hb_009252_010 0.1421356081 - - PREDICTED: kinesin light chain [Jatropha curcas]
18 Hb_004735_020 0.1448260304 - - PREDICTED: uncharacterized protein LOC105639315 [Jatropha curcas]
19 Hb_000684_280 0.146481823 - - PREDICTED: pentatricopeptide repeat-containing protein At3g09650, chloroplastic [Jatropha curcas]
20 Hb_000684_390 0.1486429904 - - PREDICTED: mediator of RNA polymerase II transcription subunit 4 [Jatropha curcas]

Gene co-expression network

sample Hb_163145_030 Hb_163145_030 Hb_005914_210 Hb_005914_210 Hb_163145_030--Hb_005914_210 Hb_001009_260 Hb_001009_260 Hb_163145_030--Hb_001009_260 Hb_130589_010 Hb_130589_010 Hb_163145_030--Hb_130589_010 Hb_003025_140 Hb_003025_140 Hb_163145_030--Hb_003025_140 Hb_000640_260 Hb_000640_260 Hb_163145_030--Hb_000640_260 Hb_177343_010 Hb_177343_010 Hb_163145_030--Hb_177343_010 Hb_000762_110 Hb_000762_110 Hb_005914_210--Hb_000762_110 Hb_001109_160 Hb_001109_160 Hb_005914_210--Hb_001109_160 Hb_001250_020 Hb_001250_020 Hb_005914_210--Hb_001250_020 Hb_021409_190 Hb_021409_190 Hb_005914_210--Hb_021409_190 Hb_005914_210--Hb_001009_260 Hb_001009_260--Hb_130589_010 Hb_000120_860 Hb_000120_860 Hb_001009_260--Hb_000120_860 Hb_002150_020 Hb_002150_020 Hb_001009_260--Hb_002150_020 Hb_005571_010 Hb_005571_010 Hb_001009_260--Hb_005571_010 Hb_004735_020 Hb_004735_020 Hb_001009_260--Hb_004735_020 Hb_000579_040 Hb_000579_040 Hb_001009_260--Hb_000579_040 Hb_130589_010--Hb_000120_860 Hb_130589_010--Hb_002150_020 Hb_000684_390 Hb_000684_390 Hb_130589_010--Hb_000684_390 Hb_130589_010--Hb_004735_020 Hb_000920_310 Hb_000920_310 Hb_130589_010--Hb_000920_310 Hb_114893_040 Hb_114893_040 Hb_003025_140--Hb_114893_040 Hb_011861_050 Hb_011861_050 Hb_003025_140--Hb_011861_050 Hb_005147_080 Hb_005147_080 Hb_003025_140--Hb_005147_080 Hb_010344_020 Hb_010344_020 Hb_003025_140--Hb_010344_020 Hb_000878_030 Hb_000878_030 Hb_003025_140--Hb_000878_030 Hb_001890_010 Hb_001890_010 Hb_000640_260--Hb_001890_010 Hb_000640_260--Hb_021409_190 Hb_166127_030 Hb_166127_030 Hb_000640_260--Hb_166127_030 Hb_000934_020 Hb_000934_020 Hb_000640_260--Hb_000934_020 Hb_000189_250 Hb_000189_250 Hb_000640_260--Hb_000189_250 Hb_003029_140 Hb_003029_140 Hb_000640_260--Hb_003029_140 Hb_000270_660 Hb_000270_660 Hb_177343_010--Hb_000270_660 Hb_059741_010 Hb_059741_010 Hb_177343_010--Hb_059741_010 Hb_002164_020 Hb_002164_020 Hb_177343_010--Hb_002164_020 Hb_011310_050 Hb_011310_050 Hb_177343_010--Hb_011310_050 Hb_010175_030 Hb_010175_030 Hb_177343_010--Hb_010175_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.06744 5.48127 14.4573 16.0412 3.69347 6.24515
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.06477 1.80518 8.91675 6.15276 39.4086

CAGE analysis