Hb_130589_010

Information

Type -
Description -
Location Contig130589: 1217-6383
Sequence    

Annotation

kegg
ID rcu:RCOM_0901430
description eukaryotic translation initiation factor 3 subunit, putative
nr
ID XP_012073132.1
description PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KLN2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06108 PE=4 SV=1
Gene Ontology
ID GO:0005829
description eukaryotic translation initiation factor 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_130589_010 0.0 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
2 Hb_001009_260 0.0579682477 - - PREDICTED: uncharacterized aarF domain-containing protein kinase 1 isoform X1 [Jatropha curcas]
3 Hb_000120_860 0.0909478593 - - nucellin, putative [Ricinus communis]
4 Hb_002150_020 0.0926091526 - - PREDICTED: translation initiation factor IF-2, mitochondrial isoform X1 [Jatropha curcas]
5 Hb_000684_390 0.1034065149 - - PREDICTED: mediator of RNA polymerase II transcription subunit 4 [Jatropha curcas]
6 Hb_004735_020 0.1044361868 - - PREDICTED: uncharacterized protein LOC105639315 [Jatropha curcas]
7 Hb_000920_310 0.1060617828 - - Ran GTPase binding protein, putative [Ricinus communis]
8 Hb_010344_030 0.1066650277 - - conserved hypothetical protein [Ricinus communis]
9 Hb_032631_070 0.1083093522 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
10 Hb_163145_030 0.1117686551 - - PREDICTED: pentatricopeptide repeat-containing protein At5g46580, chloroplastic [Jatropha curcas]
11 Hb_055690_010 0.1124162851 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
12 Hb_007441_310 0.113130393 - - PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Jatropha curcas]
13 Hb_005571_010 0.1132956536 - - PREDICTED: 15-cis-phytoene desaturase, chloroplastic/chromoplastic [Jatropha curcas]
14 Hb_004041_030 0.113464064 - - PREDICTED: mitochondrial substrate carrier family protein C-like isoform X1 [Populus euphratica]
15 Hb_016760_010 0.114022149 - - ABC transporter family protein [Hevea brasiliensis]
16 Hb_001628_120 0.1143785183 - - putative ascorbate peroxidase, partial [Taraxacum brevicorniculatum]
17 Hb_000000_310 0.1144336512 - - metalloendopeptidase, putative [Ricinus communis]
18 Hb_008375_010 0.1154059178 - - PREDICTED: carbon catabolite repressor protein 4 homolog 4 isoform X3 [Pyrus x bretschneideri]
19 Hb_000585_110 0.1157564122 - - PREDICTED: probable protein phosphatase 2C 66 [Jatropha curcas]
20 Hb_003682_070 0.1160272486 - - PREDICTED: uncharacterized protein LOC105633817 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_130589_010 Hb_130589_010 Hb_001009_260 Hb_001009_260 Hb_130589_010--Hb_001009_260 Hb_000120_860 Hb_000120_860 Hb_130589_010--Hb_000120_860 Hb_002150_020 Hb_002150_020 Hb_130589_010--Hb_002150_020 Hb_000684_390 Hb_000684_390 Hb_130589_010--Hb_000684_390 Hb_004735_020 Hb_004735_020 Hb_130589_010--Hb_004735_020 Hb_000920_310 Hb_000920_310 Hb_130589_010--Hb_000920_310 Hb_001009_260--Hb_000120_860 Hb_001009_260--Hb_002150_020 Hb_005571_010 Hb_005571_010 Hb_001009_260--Hb_005571_010 Hb_001009_260--Hb_004735_020 Hb_000579_040 Hb_000579_040 Hb_001009_260--Hb_000579_040 Hb_000270_660 Hb_000270_660 Hb_000120_860--Hb_000270_660 Hb_000000_310 Hb_000000_310 Hb_000120_860--Hb_000000_310 Hb_030959_010 Hb_030959_010 Hb_000120_860--Hb_030959_010 Hb_005116_140 Hb_005116_140 Hb_000120_860--Hb_005116_140 Hb_003682_070 Hb_003682_070 Hb_000120_860--Hb_003682_070 Hb_004041_030 Hb_004041_030 Hb_002150_020--Hb_004041_030 Hb_002150_020--Hb_005571_010 Hb_055690_010 Hb_055690_010 Hb_002150_020--Hb_055690_010 Hb_032631_070 Hb_032631_070 Hb_002150_020--Hb_032631_070 Hb_005305_020 Hb_005305_020 Hb_002150_020--Hb_005305_020 Hb_000684_390--Hb_000920_310 Hb_000684_390--Hb_000000_310 Hb_001628_120 Hb_001628_120 Hb_000684_390--Hb_001628_120 Hb_000684_390--Hb_003682_070 Hb_000107_250 Hb_000107_250 Hb_000684_390--Hb_000107_250 Hb_001017_030 Hb_001017_030 Hb_000684_390--Hb_001017_030 Hb_004735_020--Hb_000120_860 Hb_004735_020--Hb_003682_070 Hb_000629_070 Hb_000629_070 Hb_004735_020--Hb_000629_070 Hb_010344_030 Hb_010344_030 Hb_004735_020--Hb_010344_030 Hb_002955_020 Hb_002955_020 Hb_000920_310--Hb_002955_020 Hb_000860_060 Hb_000860_060 Hb_000920_310--Hb_000860_060 Hb_000417_390 Hb_000417_390 Hb_000920_310--Hb_000417_390 Hb_004306_110 Hb_004306_110 Hb_000920_310--Hb_004306_110 Hb_000920_310--Hb_000000_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.3142 4.6544 8.19562 11.2822 1.78909 5.09614
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.52816 2.43625 3.88697 5.08795 20.7802

CAGE analysis