Hb_000629_070

Information

Type -
Description -
Location Contig629: 80088-84742
Sequence    

Annotation

kegg
ID rcu:RCOM_0622880
description DNA-3-methyladenine glycosylase, putative (EC:3.2.2.20)
nr
ID XP_002529378.1
description DNA-3-methyladenine glycosylase, putative [Ricinus communis]
swissprot
ID Q7VG78
description Probable GMP synthase [glutamine-hydrolyzing] OS=Helicobacter hepaticus (strain ATCC 51449 / 3B1) GN=guaA PE=3 SV=1
trembl
ID B9STQ9
description DNA-3-methyladenine glycosylase, putative OS=Ricinus communis GN=RCOM_0622880 PE=4 SV=1
Gene Ontology
ID GO:0008725
description dna glycosylase superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51778: 80103-84645
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000629_070 0.0 - - DNA-3-methyladenine glycosylase, putative [Ricinus communis]
2 Hb_004735_020 0.0980523268 - - PREDICTED: uncharacterized protein LOC105639315 [Jatropha curcas]
3 Hb_003142_010 0.1035302788 transcription factor TF Family: SET PREDICTED: LOW QUALITY PROTEIN: histone-lysine N-methyltransferase ATX5-like [Populus euphratica]
4 Hb_011364_020 0.1134414201 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
5 Hb_001421_090 0.1156260329 - - hypothetical protein RCOM_1278080 [Ricinus communis]
6 Hb_000860_060 0.1174089655 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 6 [Jatropha curcas]
7 Hb_010344_030 0.1195895503 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002828_060 0.1206622257 - - PREDICTED: probable phytol kinase 3, chloroplastic [Jatropha curcas]
9 Hb_004957_030 0.1229646811 - - hydroxyproline-rich glycoprotein [Populus trichocarpa]
10 Hb_023988_030 0.1230667283 - - PREDICTED: transmembrane protein 19 [Vitis vinifera]
11 Hb_025194_050 0.124168835 - - PREDICTED: uncharacterized protein LOC105644851 isoform X1 [Jatropha curcas]
12 Hb_001080_070 0.1243804524 - - 1,4-alpha-glucan branching enzyme [Manihot esculenta]
13 Hb_000200_010 0.1244451461 - - PREDICTED: MATE efflux family protein 8-like [Jatropha curcas]
14 Hb_000108_020 0.1252518317 - - hypothetical protein POPTR_0019s02430g [Populus trichocarpa]
15 Hb_024184_010 0.1262881125 - - PREDICTED: clustered mitochondria protein-like isoform X1 [Citrus sinensis]
16 Hb_015099_030 0.1268258918 - - PREDICTED: uncharacterized protein LOC105649867 [Jatropha curcas]
17 Hb_001009_260 0.1268779498 - - PREDICTED: uncharacterized aarF domain-containing protein kinase 1 isoform X1 [Jatropha curcas]
18 Hb_134849_010 0.1271195696 - - ATP synthase subunit d, putative [Ricinus communis]
19 Hb_002249_080 0.1275863181 - - lysosomal alpha-mannosidase, putative [Ricinus communis]
20 Hb_001677_220 0.1276431758 - - PREDICTED: folylpolyglutamate synthase [Jatropha curcas]

Gene co-expression network

sample Hb_000629_070 Hb_000629_070 Hb_004735_020 Hb_004735_020 Hb_000629_070--Hb_004735_020 Hb_003142_010 Hb_003142_010 Hb_000629_070--Hb_003142_010 Hb_011364_020 Hb_011364_020 Hb_000629_070--Hb_011364_020 Hb_001421_090 Hb_001421_090 Hb_000629_070--Hb_001421_090 Hb_000860_060 Hb_000860_060 Hb_000629_070--Hb_000860_060 Hb_010344_030 Hb_010344_030 Hb_000629_070--Hb_010344_030 Hb_001009_260 Hb_001009_260 Hb_004735_020--Hb_001009_260 Hb_000120_860 Hb_000120_860 Hb_004735_020--Hb_000120_860 Hb_003682_070 Hb_003682_070 Hb_004735_020--Hb_003682_070 Hb_004735_020--Hb_010344_030 Hb_130589_010 Hb_130589_010 Hb_004735_020--Hb_130589_010 Hb_001677_220 Hb_001677_220 Hb_003142_010--Hb_001677_220 Hb_000189_450 Hb_000189_450 Hb_003142_010--Hb_000189_450 Hb_001080_070 Hb_001080_070 Hb_003142_010--Hb_001080_070 Hb_000200_010 Hb_000200_010 Hb_003142_010--Hb_000200_010 Hb_003142_010--Hb_001009_260 Hb_000617_250 Hb_000617_250 Hb_003142_010--Hb_000617_250 Hb_023988_030 Hb_023988_030 Hb_011364_020--Hb_023988_030 Hb_009178_060 Hb_009178_060 Hb_011364_020--Hb_009178_060 Hb_005571_010 Hb_005571_010 Hb_011364_020--Hb_005571_010 Hb_011364_020--Hb_001421_090 Hb_001105_100 Hb_001105_100 Hb_011364_020--Hb_001105_100 Hb_030959_010 Hb_030959_010 Hb_011364_020--Hb_030959_010 Hb_001421_090--Hb_000617_250 Hb_024184_010 Hb_024184_010 Hb_001421_090--Hb_024184_010 Hb_001439_070 Hb_001439_070 Hb_001421_090--Hb_001439_070 Hb_000300_510 Hb_000300_510 Hb_001421_090--Hb_000300_510 Hb_000538_280 Hb_000538_280 Hb_001421_090--Hb_000538_280 Hb_005914_040 Hb_005914_040 Hb_001421_090--Hb_005914_040 Hb_002955_020 Hb_002955_020 Hb_000860_060--Hb_002955_020 Hb_000920_310 Hb_000920_310 Hb_000860_060--Hb_000920_310 Hb_000008_340 Hb_000008_340 Hb_000860_060--Hb_000008_340 Hb_000342_170 Hb_000342_170 Hb_000860_060--Hb_000342_170 Hb_000320_340 Hb_000320_340 Hb_000860_060--Hb_000320_340 Hb_000390_190 Hb_000390_190 Hb_000860_060--Hb_000390_190 Hb_006006_060 Hb_006006_060 Hb_010344_030--Hb_006006_060 Hb_005250_010 Hb_005250_010 Hb_010344_030--Hb_005250_010 Hb_000200_350 Hb_000200_350 Hb_010344_030--Hb_000200_350 Hb_000388_150 Hb_000388_150 Hb_010344_030--Hb_000388_150 Hb_003462_060 Hb_003462_060 Hb_010344_030--Hb_003462_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.94078 2.55554 4.25586 6.26905 1.25881 3.11253
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.61148 1.60885 0.847911 3.91301 10.2957

CAGE analysis