Hb_001080_070

Information

Type -
Description -
Location Contig1080: 21635-30262
Sequence    

Annotation

kegg
ID rcu:RCOM_1600980
description starch branching enzyme II, putative (EC:2.4.1.18)
nr
ID CAA54308.1
description 1,4-alpha-glucan branching enzyme [Manihot esculenta]
swissprot
ID Q41059
description 1,4-alpha-glucan-branching enzyme 1, chloroplastic/amyloplastic (Fragment) OS=Pisum sativum GN=SBEII PE=1 SV=1
trembl
ID Q08131
description 1,4-alpha-glucan branching enzyme OS=Manihot esculenta GN=SBE PE=2 SV=2
Gene Ontology
ID GO:0003844
description #NAME?

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02404: 21649-30215 , PASA_asmbl_02405: 21649-23018
cDNA
(Sanger)
(ID:Location)		 038_I12.ab1: 21709-23018 , 047_J19r.ab1: 30740-33493

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001080_070 0.0 - - 1,4-alpha-glucan branching enzyme [Manihot esculenta]
2 Hb_000189_450 0.085065257 - - Zeta-carotene desaturase, chloroplast precursor, putative [Ricinus communis]
3 Hb_003142_010 0.0880644577 transcription factor TF Family: SET PREDICTED: LOW QUALITY PROTEIN: histone-lysine N-methyltransferase ATX5-like [Populus euphratica]
4 Hb_000345_370 0.0939851176 - - PREDICTED: probable Xaa-Pro aminopeptidase P [Jatropha curcas]
5 Hb_000648_040 0.0955140922 - - unknown [Populus trichocarpa]
6 Hb_016461_030 0.098522685 - - PREDICTED: putative leucine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]
7 Hb_001677_220 0.1004239231 - - PREDICTED: folylpolyglutamate synthase [Jatropha curcas]
8 Hb_000200_350 0.10356913 - - PREDICTED: uncharacterized protein LOC105636929 [Jatropha curcas]
9 Hb_002282_070 0.1042836537 - - PREDICTED: protein DJ-1 homolog C isoform X2 [Jatropha curcas]
10 Hb_016760_010 0.1043590633 - - ABC transporter family protein [Hevea brasiliensis]
11 Hb_025477_050 0.1045758843 - - ABC transporter family protein [Hevea brasiliensis]
12 Hb_009020_040 0.1068910536 - - PREDICTED: triacylglycerol lipase 1 isoform X1 [Jatropha curcas]
13 Hb_002542_160 0.1073380864 - - PREDICTED: peptide chain release factor APG3, chloroplastic [Jatropha curcas]
14 Hb_000200_010 0.1093922298 - - PREDICTED: MATE efflux family protein 8-like [Jatropha curcas]
15 Hb_007769_040 0.1096924278 - - PREDICTED: probable threonine--tRNA ligase, cytoplasmic [Jatropha curcas]
16 Hb_000613_110 0.1101140482 - - PREDICTED: uncharacterized protein LOC105641540 [Jatropha curcas]
17 Hb_000085_070 0.1144170487 - - PREDICTED: trigger factor-like protein TIG, Chloroplastic isoform X1 [Jatropha curcas]
18 Hb_001220_050 0.1145473049 - - DNA-damage-inducible protein f, putative [Ricinus communis]
19 Hb_023988_030 0.1148169522 - - PREDICTED: transmembrane protein 19 [Vitis vinifera]
20 Hb_004735_020 0.1149082138 - - PREDICTED: uncharacterized protein LOC105639315 [Jatropha curcas]

Gene co-expression network

sample Hb_001080_070 Hb_001080_070 Hb_000189_450 Hb_000189_450 Hb_001080_070--Hb_000189_450 Hb_003142_010 Hb_003142_010 Hb_001080_070--Hb_003142_010 Hb_000345_370 Hb_000345_370 Hb_001080_070--Hb_000345_370 Hb_000648_040 Hb_000648_040 Hb_001080_070--Hb_000648_040 Hb_016461_030 Hb_016461_030 Hb_001080_070--Hb_016461_030 Hb_001677_220 Hb_001677_220 Hb_001080_070--Hb_001677_220 Hb_000189_450--Hb_001677_220 Hb_000816_200 Hb_000816_200 Hb_000189_450--Hb_000816_200 Hb_016219_030 Hb_016219_030 Hb_000189_450--Hb_016219_030 Hb_000189_450--Hb_003142_010 Hb_000114_150 Hb_000114_150 Hb_000189_450--Hb_000114_150 Hb_003142_010--Hb_001677_220 Hb_000200_010 Hb_000200_010 Hb_003142_010--Hb_000200_010 Hb_001009_260 Hb_001009_260 Hb_003142_010--Hb_001009_260 Hb_000617_250 Hb_000617_250 Hb_003142_010--Hb_000617_250 Hb_000144_060 Hb_000144_060 Hb_000345_370--Hb_000144_060 Hb_002282_070 Hb_002282_070 Hb_000345_370--Hb_002282_070 Hb_002542_160 Hb_002542_160 Hb_000345_370--Hb_002542_160 Hb_000220_210 Hb_000220_210 Hb_000345_370--Hb_000220_210 Hb_000309_020 Hb_000309_020 Hb_000345_370--Hb_000309_020 Hb_000345_370--Hb_016461_030 Hb_000130_320 Hb_000130_320 Hb_000648_040--Hb_000130_320 Hb_005731_160 Hb_005731_160 Hb_000648_040--Hb_005731_160 Hb_002758_010 Hb_002758_010 Hb_000648_040--Hb_002758_010 Hb_000613_110 Hb_000613_110 Hb_000648_040--Hb_000613_110 Hb_003475_020 Hb_003475_020 Hb_000648_040--Hb_003475_020 Hb_016461_030--Hb_002282_070 Hb_016461_030--Hb_000816_200 Hb_003777_020 Hb_003777_020 Hb_016461_030--Hb_003777_020 Hb_016461_030--Hb_002542_160 Hb_001427_040 Hb_001427_040 Hb_016461_030--Hb_001427_040 Hb_000032_500 Hb_000032_500 Hb_001677_220--Hb_000032_500 Hb_000008_350 Hb_000008_350 Hb_001677_220--Hb_000008_350 Hb_003124_120 Hb_003124_120 Hb_001677_220--Hb_003124_120 Hb_001677_220--Hb_000816_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.60764 3.83957 8.71447 10.0659 5.75749 7.13409
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.09409 5.93911 2.16138 6.48434 27.2748

CAGE analysis