Hb_016219_030

Information

Type -
Description -
Location Contig16219: 46120-50137
Sequence    

Annotation

kegg
ID rcu:RCOM_0671520
description cytochrome P450, putative (EC:1.14.14.1)
nr
ID XP_002520583.1
description cytochrome P450, putative [Ricinus communis]
swissprot
ID O48921
description Cytochrome P450 97B2, chloroplastic OS=Glycine max GN=CYP97B2 PE=2 SV=1
trembl
ID B9S3L4
description Cytochrome P450, putative OS=Ricinus communis GN=RCOM_0671520 PE=3 SV=1
Gene Ontology
ID GO:0009570
description cytochrome p450 chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14650: 25214-47571 , PASA_asmbl_14655: 49420-50573
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_016219_030 0.0 - - cytochrome P450, putative [Ricinus communis]
2 Hb_000189_450 0.0748377267 - - Zeta-carotene desaturase, chloroplast precursor, putative [Ricinus communis]
3 Hb_000438_140 0.0800174449 - - hypothetical protein CISIN_1g018088mg [Citrus sinensis]
4 Hb_002053_010 0.0840197969 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Jatropha curcas]
5 Hb_001789_200 0.0901304969 - - PREDICTED: sec-independent protein translocase protein TATB, chloroplastic [Jatropha curcas]
6 Hb_000032_500 0.0956975794 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
7 Hb_001105_040 0.0970463017 - - PREDICTED: probable plastid-lipid-associated protein 10, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_016219_010 0.0996428787 - - hypothetical protein B456_001G213800 [Gossypium raimondii]
9 Hb_001898_180 0.1014170224 - - PREDICTED: translation initiation factor IF-1, chloroplastic [Jatropha curcas]
10 Hb_008375_010 0.1017650764 - - PREDICTED: carbon catabolite repressor protein 4 homolog 4 isoform X3 [Pyrus x bretschneideri]
11 Hb_008695_200 0.1018155447 - - Protein grpE, putative [Ricinus communis]
12 Hb_000200_010 0.1029972725 - - PREDICTED: MATE efflux family protein 8-like [Jatropha curcas]
13 Hb_007441_310 0.1043471067 - - PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Jatropha curcas]
14 Hb_048093_010 0.1046039743 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
15 Hb_001677_220 0.1053340742 - - PREDICTED: folylpolyglutamate synthase [Jatropha curcas]
16 Hb_000816_200 0.1055319379 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
17 Hb_004644_030 0.1066473152 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
18 Hb_134849_010 0.1077461121 - - ATP synthase subunit d, putative [Ricinus communis]
19 Hb_000397_150 0.1081520567 - - PREDICTED: probable flavin-containing monooxygenase 1 [Jatropha curcas]
20 Hb_055690_010 0.1105531905 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_016219_030 Hb_016219_030 Hb_000189_450 Hb_000189_450 Hb_016219_030--Hb_000189_450 Hb_000438_140 Hb_000438_140 Hb_016219_030--Hb_000438_140 Hb_002053_010 Hb_002053_010 Hb_016219_030--Hb_002053_010 Hb_001789_200 Hb_001789_200 Hb_016219_030--Hb_001789_200 Hb_000032_500 Hb_000032_500 Hb_016219_030--Hb_000032_500 Hb_001105_040 Hb_001105_040 Hb_016219_030--Hb_001105_040 Hb_001677_220 Hb_001677_220 Hb_000189_450--Hb_001677_220 Hb_000816_200 Hb_000816_200 Hb_000189_450--Hb_000816_200 Hb_003142_010 Hb_003142_010 Hb_000189_450--Hb_003142_010 Hb_001080_070 Hb_001080_070 Hb_000189_450--Hb_001080_070 Hb_000114_150 Hb_000114_150 Hb_000189_450--Hb_000114_150 Hb_012506_070 Hb_012506_070 Hb_000438_140--Hb_012506_070 Hb_008695_200 Hb_008695_200 Hb_000438_140--Hb_008695_200 Hb_004440_060 Hb_004440_060 Hb_000438_140--Hb_004440_060 Hb_000438_140--Hb_002053_010 Hb_000200_010 Hb_000200_010 Hb_000438_140--Hb_000200_010 Hb_002053_010--Hb_001789_200 Hb_002053_010--Hb_008695_200 Hb_001369_790 Hb_001369_790 Hb_002053_010--Hb_001369_790 Hb_002053_010--Hb_004440_060 Hb_000086_080 Hb_000086_080 Hb_002053_010--Hb_000086_080 Hb_000388_060 Hb_000388_060 Hb_001789_200--Hb_000388_060 Hb_001789_200--Hb_001369_790 Hb_004644_030 Hb_004644_030 Hb_001789_200--Hb_004644_030 Hb_007441_310 Hb_007441_310 Hb_001789_200--Hb_007441_310 Hb_134849_010 Hb_134849_010 Hb_000032_500--Hb_134849_010 Hb_000032_500--Hb_001677_220 Hb_000032_500--Hb_001105_040 Hb_000941_100 Hb_000941_100 Hb_000032_500--Hb_000941_100 Hb_000032_500--Hb_000200_010 Hb_008705_020 Hb_008705_020 Hb_000032_500--Hb_008705_020 Hb_001832_200 Hb_001832_200 Hb_001105_040--Hb_001832_200 Hb_025194_050 Hb_025194_050 Hb_001105_040--Hb_025194_050 Hb_000128_060 Hb_000128_060 Hb_001105_040--Hb_000128_060 Hb_016219_010 Hb_016219_010 Hb_001105_040--Hb_016219_010 Hb_001105_040--Hb_008705_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.0077 3.23144 8.37501 10.6221 2.10214 4.0439
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.63149 6.27308 2.00339 5.16267 16.8335

CAGE analysis