Hb_008695_200

Information

Type -
Description -
Location Contig8695: 166843-169668
Sequence    

Annotation

kegg
ID rcu:RCOM_1033170
description Protein grpE, putative (EC:5.1.3.1)
nr
ID XP_002513845.1
description Protein grpE, putative [Ricinus communis]
swissprot
ID Q8DJB3
description Protein GrpE OS=Thermosynechococcus elongatus (strain BP-1) GN=grpE PE=3 SV=1
trembl
ID B9RJC6
description GrpE protein homolog OS=Ricinus communis GN=RCOM_1033170 PE=3 SV=1
Gene Ontology
ID GO:0005739
description grpe protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61116: 166817-169910
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008695_200 0.0 - - Protein grpE, putative [Ricinus communis]
2 Hb_003994_160 0.0678701207 - - PREDICTED: uncharacterized protein LOC105131691 isoform X5 [Populus euphratica]
3 Hb_002053_010 0.0744679464 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Jatropha curcas]
4 Hb_000086_080 0.0779267345 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001369_790 0.087786536 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic [Jatropha curcas]
6 Hb_003053_110 0.0955959032 - - PREDICTED: protease Do-like 1, chloroplastic [Jatropha curcas]
7 Hb_007192_030 0.0958215733 - - PREDICTED: manganese-dependent ADP-ribose/CDP-alcohol diphosphatase [Jatropha curcas]
8 Hb_000622_290 0.0973087842 - - PREDICTED: F-box/kelch-repeat protein At3g61590 [Jatropha curcas]
9 Hb_000438_140 0.098440404 - - hypothetical protein CISIN_1g018088mg [Citrus sinensis]
10 Hb_002762_110 0.0990243206 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004440_060 0.0990950693 - - aldose 1-epimerase, putative [Ricinus communis]
12 Hb_016219_030 0.1018155447 - - cytochrome P450, putative [Ricinus communis]
13 Hb_001789_200 0.1019172542 - - PREDICTED: sec-independent protein translocase protein TATB, chloroplastic [Jatropha curcas]
14 Hb_001898_180 0.1039784625 - - PREDICTED: translation initiation factor IF-1, chloroplastic [Jatropha curcas]
15 Hb_000941_100 0.1046998231 - - thioredoxin-like 5 mRNA family protein [Populus trichocarpa]
16 Hb_001946_160 0.1051648503 - - putative chaperon P13.9 [Castanea sativa]
17 Hb_004644_030 0.1059306948 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
18 Hb_134849_010 0.1062406403 - - ATP synthase subunit d, putative [Ricinus communis]
19 Hb_001711_120 0.107764321 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Jatropha curcas]
20 Hb_000023_360 0.1091625827 - - phospholipid hydroperoxide glutathione peroxidase 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_008695_200 Hb_008695_200 Hb_003994_160 Hb_003994_160 Hb_008695_200--Hb_003994_160 Hb_002053_010 Hb_002053_010 Hb_008695_200--Hb_002053_010 Hb_000086_080 Hb_000086_080 Hb_008695_200--Hb_000086_080 Hb_001369_790 Hb_001369_790 Hb_008695_200--Hb_001369_790 Hb_003053_110 Hb_003053_110 Hb_008695_200--Hb_003053_110 Hb_007192_030 Hb_007192_030 Hb_008695_200--Hb_007192_030 Hb_003994_160--Hb_000086_080 Hb_073973_090 Hb_073973_090 Hb_003994_160--Hb_073973_090 Hb_003994_160--Hb_003053_110 Hb_003994_160--Hb_007192_030 Hb_000941_100 Hb_000941_100 Hb_003994_160--Hb_000941_100 Hb_001789_200 Hb_001789_200 Hb_002053_010--Hb_001789_200 Hb_016219_030 Hb_016219_030 Hb_002053_010--Hb_016219_030 Hb_002053_010--Hb_001369_790 Hb_004440_060 Hb_004440_060 Hb_002053_010--Hb_004440_060 Hb_002053_010--Hb_000086_080 Hb_000086_080--Hb_007192_030 Hb_000086_080--Hb_073973_090 Hb_003266_030 Hb_003266_030 Hb_000086_080--Hb_003266_030 Hb_011671_260 Hb_011671_260 Hb_000086_080--Hb_011671_260 Hb_000023_360 Hb_000023_360 Hb_000086_080--Hb_000023_360 Hb_000086_080--Hb_003053_110 Hb_001369_790--Hb_007192_030 Hb_001369_790--Hb_004440_060 Hb_000392_550 Hb_000392_550 Hb_001369_790--Hb_000392_550 Hb_001369_790--Hb_000086_080 Hb_000394_180 Hb_000394_180 Hb_001369_790--Hb_000394_180 Hb_000622_290 Hb_000622_290 Hb_001369_790--Hb_000622_290 Hb_012150_030 Hb_012150_030 Hb_003053_110--Hb_012150_030 Hb_003053_110--Hb_000941_100 Hb_008705_020 Hb_008705_020 Hb_003053_110--Hb_008705_020 Hb_001195_770 Hb_001195_770 Hb_003053_110--Hb_001195_770 Hb_007741_110 Hb_007741_110 Hb_003053_110--Hb_007741_110 Hb_134849_010 Hb_134849_010 Hb_003053_110--Hb_134849_010 Hb_007192_030--Hb_000394_180 Hb_007192_030--Hb_000622_290 Hb_007904_230 Hb_007904_230 Hb_007192_030--Hb_007904_230 Hb_004951_060 Hb_004951_060 Hb_007192_030--Hb_004951_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.22111 7.31395 20.299 19.535 4.6734 7.74098
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.70962 21.2524 6.63623 9.36909 35.0724

CAGE analysis