Hb_003994_160

Information

Type -
Description -
Location Contig3994: 178096-181312
Sequence    

Annotation

kegg
ID csv:101223867
description uncharacterized LOC101223867
nr
ID XP_011033083.1
description PREDICTED: uncharacterized protein LOC105131691 isoform X5 [Populus euphratica]
swissprot
ID -
description -
trembl
ID A0A061GGV3
description Tetratricopeptide repeat (TPR)-like superfamily protein isoform 4 (Fragment) OS=Theobroma cacao GN=TCM_027744 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39746: 179065-179204 , PASA_asmbl_39747: 179423-180614 , PASA_asmbl_39748: 180128-180668 , PASA_asmbl_39750: 180829-181052
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003994_160 0.0 - - PREDICTED: uncharacterized protein LOC105131691 isoform X5 [Populus euphratica]
2 Hb_008695_200 0.0678701207 - - Protein grpE, putative [Ricinus communis]
3 Hb_000086_080 0.0821768327 - - conserved hypothetical protein [Ricinus communis]
4 Hb_073973_090 0.0880788831 - - Aminotransferase ybdL, putative [Ricinus communis]
5 Hb_003053_110 0.0887471895 - - PREDICTED: protease Do-like 1, chloroplastic [Jatropha curcas]
6 Hb_007192_030 0.093382672 - - PREDICTED: manganese-dependent ADP-ribose/CDP-alcohol diphosphatase [Jatropha curcas]
7 Hb_000941_100 0.0951163007 - - thioredoxin-like 5 mRNA family protein [Populus trichocarpa]
8 Hb_157023_020 0.0963705395 - - nucleic acid binding protein, putative [Ricinus communis]
9 Hb_000023_360 0.0997128942 - - phospholipid hydroperoxide glutathione peroxidase 1, chloroplastic [Jatropha curcas]
10 Hb_134849_010 0.1003065246 - - ATP synthase subunit d, putative [Ricinus communis]
11 Hb_000645_280 0.1021164299 - - PREDICTED: AMSH-like ubiquitin thioesterase 3 [Jatropha curcas]
12 Hb_000487_260 0.1033538201 - - PREDICTED: protein Iojap, chloroplastic [Jatropha curcas]
13 Hb_005511_140 0.1036352708 - - Ubiquinone biosynthesis protein coq-8, putative [Ricinus communis]
14 Hb_002762_110 0.1053508404 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000811_070 0.1053988943 - - PREDICTED: uncharacterized protein LOC105650695 [Jatropha curcas]
16 Hb_004440_060 0.1064376239 - - aldose 1-epimerase, putative [Ricinus communis]
17 Hb_006907_060 0.1067954465 - - Alternative oxidase 4, chloroplast precursor, putative [Ricinus communis]
18 Hb_000077_150 0.1073018235 - - PREDICTED: riboflavin synthase [Jatropha curcas]
19 Hb_007741_110 0.1079128806 - - -
20 Hb_012150_030 0.1084587765 - - PREDICTED: aspartate--tRNA ligase, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_003994_160 Hb_003994_160 Hb_008695_200 Hb_008695_200 Hb_003994_160--Hb_008695_200 Hb_000086_080 Hb_000086_080 Hb_003994_160--Hb_000086_080 Hb_073973_090 Hb_073973_090 Hb_003994_160--Hb_073973_090 Hb_003053_110 Hb_003053_110 Hb_003994_160--Hb_003053_110 Hb_007192_030 Hb_007192_030 Hb_003994_160--Hb_007192_030 Hb_000941_100 Hb_000941_100 Hb_003994_160--Hb_000941_100 Hb_002053_010 Hb_002053_010 Hb_008695_200--Hb_002053_010 Hb_008695_200--Hb_000086_080 Hb_001369_790 Hb_001369_790 Hb_008695_200--Hb_001369_790 Hb_008695_200--Hb_003053_110 Hb_008695_200--Hb_007192_030 Hb_000086_080--Hb_007192_030 Hb_000086_080--Hb_073973_090 Hb_003266_030 Hb_003266_030 Hb_000086_080--Hb_003266_030 Hb_011671_260 Hb_011671_260 Hb_000086_080--Hb_011671_260 Hb_000023_360 Hb_000023_360 Hb_000086_080--Hb_000023_360 Hb_000086_080--Hb_003053_110 Hb_000035_090 Hb_000035_090 Hb_073973_090--Hb_000035_090 Hb_073973_090--Hb_000023_360 Hb_002631_240 Hb_002631_240 Hb_073973_090--Hb_002631_240 Hb_073973_090--Hb_011671_260 Hb_049575_010 Hb_049575_010 Hb_073973_090--Hb_049575_010 Hb_000537_100 Hb_000537_100 Hb_073973_090--Hb_000537_100 Hb_012150_030 Hb_012150_030 Hb_003053_110--Hb_012150_030 Hb_003053_110--Hb_000941_100 Hb_008705_020 Hb_008705_020 Hb_003053_110--Hb_008705_020 Hb_001195_770 Hb_001195_770 Hb_003053_110--Hb_001195_770 Hb_007741_110 Hb_007741_110 Hb_003053_110--Hb_007741_110 Hb_134849_010 Hb_134849_010 Hb_003053_110--Hb_134849_010 Hb_007192_030--Hb_001369_790 Hb_000394_180 Hb_000394_180 Hb_007192_030--Hb_000394_180 Hb_000622_290 Hb_000622_290 Hb_007192_030--Hb_000622_290 Hb_007904_230 Hb_007904_230 Hb_007192_030--Hb_007904_230 Hb_004951_060 Hb_004951_060 Hb_007192_030--Hb_004951_060 Hb_048093_010 Hb_048093_010 Hb_000941_100--Hb_048093_010 Hb_000941_100--Hb_001195_770 Hb_000941_100--Hb_012150_030 Hb_006907_060 Hb_006907_060 Hb_000941_100--Hb_006907_060 Hb_005539_010 Hb_005539_010 Hb_000941_100--Hb_005539_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.82529 11.4081 22.2979 22.0939 9.79716 11.2839
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.6416 26.2906 9.23533 10.2804 37.6283

CAGE analysis