Hb_000023_360

Information

Type -
Description -
Location Contig23: 562743-566314
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa010584mg
description hypothetical protein
nr
ID NP_001292953.1
description phospholipid hydroperoxide glutathione peroxidase 1, chloroplastic [Jatropha curcas]
swissprot
ID P52032
description Phospholipid hydroperoxide glutathione peroxidase 1, chloroplastic OS=Arabidopsis thaliana GN=GPX1 PE=2 SV=2
trembl
ID D6BR59
description Glutathione peroxidase OS=Jatropha curcas GN=JCGZ_07072 PE=2 SV=1
Gene Ontology
ID GO:0004602
description probable phospholipid hydroperoxide glutathione peroxidase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23973: 562756-566248 , PASA_asmbl_23974: 564300-564634 , PASA_asmbl_23975: 563281-563818
cDNA
(Sanger)
(ID:Location)		 001_D18.ab1: 563071-566248 , 031_L05.ab1: 563980-566248

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000023_360 0.0 - - phospholipid hydroperoxide glutathione peroxidase 1, chloroplastic [Jatropha curcas]
2 Hb_073973_090 0.0623847873 - - Aminotransferase ybdL, putative [Ricinus communis]
3 Hb_005511_140 0.0646167777 - - Ubiquinone biosynthesis protein coq-8, putative [Ricinus communis]
4 Hb_000086_080 0.0769049692 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001675_140 0.0785322591 - - hypothetical protein L484_026216 [Morus notabilis]
6 Hb_062226_060 0.0795374363 - - PREDICTED: mitochondrial substrate carrier family protein B-like [Jatropha curcas]
7 Hb_158530_020 0.0812843687 - - PREDICTED: aspartic proteinase CDR1 [Jatropha curcas]
8 Hb_000128_060 0.0813119476 - - PREDICTED: sodium/pyruvate cotransporter BASS2, chloroplastic isoform X1 [Vitis vinifera]
9 Hb_001511_090 0.0813452279 - - PREDICTED: uncharacterized protein LOC105645861 [Jatropha curcas]
10 Hb_002762_110 0.0817201681 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003053_110 0.0818304694 - - PREDICTED: protease Do-like 1, chloroplastic [Jatropha curcas]
12 Hb_000270_480 0.0821345962 - - Mannose-1-phosphate guanyltransferase alpha [Gossypium arboreum]
13 Hb_003462_180 0.0860724997 transcription factor TF Family: GNAT PREDICTED: probable acetyltransferase NATA1-like [Jatropha curcas]
14 Hb_011671_260 0.086218667 - - PREDICTED: putative lipase ROG1 isoform X1 [Jatropha curcas]
15 Hb_012150_030 0.0895404274 - - PREDICTED: aspartate--tRNA ligase, mitochondrial [Jatropha curcas]
16 Hb_049575_010 0.0903893627 - - hypothetical protein POPTR_0001s15330g [Populus trichocarpa]
17 Hb_001195_450 0.0917205145 - - PREDICTED: uncharacterized protein LOC105633771 [Jatropha curcas]
18 Hb_000088_260 0.0934848549 - - PREDICTED: uncharacterized protein LOC105636987 [Jatropha curcas]
19 Hb_134849_010 0.0937590936 - - ATP synthase subunit d, putative [Ricinus communis]
20 Hb_001900_140 0.0945660436 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000023_360 Hb_000023_360 Hb_073973_090 Hb_073973_090 Hb_000023_360--Hb_073973_090 Hb_005511_140 Hb_005511_140 Hb_000023_360--Hb_005511_140 Hb_000086_080 Hb_000086_080 Hb_000023_360--Hb_000086_080 Hb_001675_140 Hb_001675_140 Hb_000023_360--Hb_001675_140 Hb_062226_060 Hb_062226_060 Hb_000023_360--Hb_062226_060 Hb_158530_020 Hb_158530_020 Hb_000023_360--Hb_158530_020 Hb_000035_090 Hb_000035_090 Hb_073973_090--Hb_000035_090 Hb_002631_240 Hb_002631_240 Hb_073973_090--Hb_002631_240 Hb_011671_260 Hb_011671_260 Hb_073973_090--Hb_011671_260 Hb_049575_010 Hb_049575_010 Hb_073973_090--Hb_049575_010 Hb_000537_100 Hb_000537_100 Hb_073973_090--Hb_000537_100 Hb_000340_040 Hb_000340_040 Hb_005511_140--Hb_000340_040 Hb_000282_080 Hb_000282_080 Hb_005511_140--Hb_000282_080 Hb_001195_450 Hb_001195_450 Hb_005511_140--Hb_001195_450 Hb_000169_020 Hb_000169_020 Hb_005511_140--Hb_000169_020 Hb_005511_140--Hb_073973_090 Hb_007192_030 Hb_007192_030 Hb_000086_080--Hb_007192_030 Hb_000086_080--Hb_073973_090 Hb_003266_030 Hb_003266_030 Hb_000086_080--Hb_003266_030 Hb_000086_080--Hb_011671_260 Hb_003053_110 Hb_003053_110 Hb_000086_080--Hb_003053_110 Hb_000270_480 Hb_000270_480 Hb_001675_140--Hb_000270_480 Hb_001675_140--Hb_011671_260 Hb_001675_140--Hb_000086_080 Hb_000128_060 Hb_000128_060 Hb_001675_140--Hb_000128_060 Hb_001675_140--Hb_073973_090 Hb_004951_060 Hb_004951_060 Hb_062226_060--Hb_004951_060 Hb_062226_060--Hb_158530_020 Hb_007904_230 Hb_007904_230 Hb_062226_060--Hb_007904_230 Hb_000364_050 Hb_000364_050 Hb_062226_060--Hb_000364_050 Hb_000811_070 Hb_000811_070 Hb_062226_060--Hb_000811_070 Hb_015675_040 Hb_015675_040 Hb_158530_020--Hb_015675_040 Hb_000504_180 Hb_000504_180 Hb_158530_020--Hb_000504_180 Hb_000185_220 Hb_000185_220 Hb_158530_020--Hb_000185_220 Hb_006059_010 Hb_006059_010 Hb_158530_020--Hb_006059_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
38.7419 74.6352 115.462 97.4217 26.7114 35.7908
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
72.4594 87.8332 51.0993 60.244 152.105

CAGE analysis