Hb_015675_040

Information

Type -
Description -
Location Contig15675: 50253-55560
Sequence    

Annotation

kegg
ID tcc:TCM_042341
description Phosphoribosyltransferase family protein isoform 1
nr
ID XP_012072626.1
description PREDICTED: ribose-phosphate pyrophosphokinase 1 [Jatropha curcas]
swissprot
ID Q9XG98
description Ribose-phosphate pyrophosphokinase 1 OS=Spinacia oleracea GN=PRS1 PE=2 SV=1
trembl
ID A0A067KZX4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06692 PE=3 SV=1
Gene Ontology
ID GO:0000287
description ribose-phosphate pyrophosphokinase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13635: 50242-55590 , PASA_asmbl_13636: 50247-55385 , PASA_asmbl_13637: 53217-55457 , PASA_asmbl_13638: 50678-52876
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015675_040 0.0 - - PREDICTED: ribose-phosphate pyrophosphokinase 1 [Jatropha curcas]
2 Hb_000080_130 0.0614545183 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
3 Hb_158530_020 0.0616252854 - - PREDICTED: aspartic proteinase CDR1 [Jatropha curcas]
4 Hb_005976_080 0.0672462509 - - PREDICTED: RNA-binding protein Musashi homolog 1 [Jatropha curcas]
5 Hb_011224_050 0.0678114083 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Populus euphratica]
6 Hb_000840_200 0.0749245198 - - PREDICTED: carbamoyl-phosphate synthase small chain, chloroplastic-like [Jatropha curcas]
7 Hb_000185_220 0.076862595 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]
8 Hb_001195_400 0.0771019658 - - glucose-6-phosphate isomerase, putative [Ricinus communis]
9 Hb_003878_150 0.0784537503 - - PREDICTED: GPI mannosyltransferase 3 [Jatropha curcas]
10 Hb_001662_130 0.0786583381 - - PREDICTED: bifunctional nuclease 2 isoform X1 [Jatropha curcas]
11 Hb_002272_270 0.0799291369 - - hypothetical protein POPTR_0013s02780g [Populus trichocarpa]
12 Hb_004545_110 0.0799766539 - - DHHC-type zinc finger family protein isoform 1 [Theobroma cacao]
13 Hb_062226_060 0.0804907344 - - PREDICTED: mitochondrial substrate carrier family protein B-like [Jatropha curcas]
14 Hb_008033_040 0.0806099163 - - PREDICTED: MATE efflux family protein 3, chloroplastic [Jatropha curcas]
15 Hb_000504_180 0.0817631142 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
16 Hb_028487_070 0.0821654292 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001789_110 0.0828434503 - - ubiquitin-protein ligase, putative [Ricinus communis]
18 Hb_002303_020 0.0828990499 - - PREDICTED: lysine--tRNA ligase-like [Gossypium raimondii]
19 Hb_005800_030 0.083468669 - - PREDICTED: lysM and putative peptidoglycan-binding domain-containing protein 4-like [Jatropha curcas]
20 Hb_006913_020 0.0843267249 - - PREDICTED: uncharacterized protein LOC105649145 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_015675_040 Hb_015675_040 Hb_000080_130 Hb_000080_130 Hb_015675_040--Hb_000080_130 Hb_158530_020 Hb_158530_020 Hb_015675_040--Hb_158530_020 Hb_005976_080 Hb_005976_080 Hb_015675_040--Hb_005976_080 Hb_011224_050 Hb_011224_050 Hb_015675_040--Hb_011224_050 Hb_000840_200 Hb_000840_200 Hb_015675_040--Hb_000840_200 Hb_000185_220 Hb_000185_220 Hb_015675_040--Hb_000185_220 Hb_004545_110 Hb_004545_110 Hb_000080_130--Hb_004545_110 Hb_001269_130 Hb_001269_130 Hb_000080_130--Hb_001269_130 Hb_133702_010 Hb_133702_010 Hb_000080_130--Hb_133702_010 Hb_005167_010 Hb_005167_010 Hb_000080_130--Hb_005167_010 Hb_000663_060 Hb_000663_060 Hb_000080_130--Hb_000663_060 Hb_000504_180 Hb_000504_180 Hb_158530_020--Hb_000504_180 Hb_158530_020--Hb_000185_220 Hb_062226_060 Hb_062226_060 Hb_158530_020--Hb_062226_060 Hb_006059_010 Hb_006059_010 Hb_158530_020--Hb_006059_010 Hb_000023_360 Hb_000023_360 Hb_158530_020--Hb_000023_360 Hb_004159_020 Hb_004159_020 Hb_005976_080--Hb_004159_020 Hb_000656_010 Hb_000656_010 Hb_005976_080--Hb_000656_010 Hb_003878_150 Hb_003878_150 Hb_005976_080--Hb_003878_150 Hb_027073_020 Hb_027073_020 Hb_005976_080--Hb_027073_020 Hb_001195_400 Hb_001195_400 Hb_005976_080--Hb_001195_400 Hb_011224_050--Hb_003878_150 Hb_011224_050--Hb_001195_400 Hb_001975_150 Hb_001975_150 Hb_011224_050--Hb_001975_150 Hb_011224_050--Hb_000504_180 Hb_028487_160 Hb_028487_160 Hb_011224_050--Hb_028487_160 Hb_002303_020 Hb_002303_020 Hb_000840_200--Hb_002303_020 Hb_002272_270 Hb_002272_270 Hb_000840_200--Hb_002272_270 Hb_003878_090 Hb_003878_090 Hb_000840_200--Hb_003878_090 Hb_157023_020 Hb_157023_020 Hb_000840_200--Hb_157023_020 Hb_000069_720 Hb_000069_720 Hb_000840_200--Hb_000069_720 Hb_000185_220--Hb_006059_010 Hb_000185_220--Hb_001195_400 Hb_003206_110 Hb_003206_110 Hb_000185_220--Hb_003206_110 Hb_001080_300 Hb_001080_300 Hb_000185_220--Hb_001080_300 Hb_000309_050 Hb_000309_050 Hb_000185_220--Hb_000309_050 Hb_000185_220--Hb_001975_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.90896 8.87397 11.8066 15.448 6.1067 8.53961
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.0636 12.9879 9.50583 11.312 17.6935

CAGE analysis