Hb_011224_050

Information

Type -
Description -
Location Contig11224: 27290-30588
Sequence    

Annotation

kegg
ID mdm:103422499
description heterogeneous nuclear ribonucleoprotein 1-like
nr
ID XP_011038851.1
description PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Populus euphratica]
swissprot
ID Q8W034
description Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana GN=RNP1 PE=1 SV=1
trembl
ID B9GFZ8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s37920g PE=4 SV=2
Gene Ontology
ID GO:0005634
description heterogeneous nuclear ribonucleoprotein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03687: 27359-30490 , PASA_asmbl_03688: 28918-29194
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011224_050 0.0 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Populus euphratica]
2 Hb_015675_040 0.0678114083 - - PREDICTED: ribose-phosphate pyrophosphokinase 1 [Jatropha curcas]
3 Hb_003878_150 0.0784934108 - - PREDICTED: GPI mannosyltransferase 3 [Jatropha curcas]
4 Hb_001195_400 0.0832764894 - - glucose-6-phosphate isomerase, putative [Ricinus communis]
5 Hb_001975_150 0.0833796997 - - PREDICTED: RINT1-like protein MAG2L [Jatropha curcas]
6 Hb_000504_180 0.0852606855 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
7 Hb_028487_160 0.0853280703 - - clathrin assembly protein, putative [Ricinus communis]
8 Hb_001789_110 0.0854079438 - - ubiquitin-protein ligase, putative [Ricinus communis]
9 Hb_001662_100 0.085486563 - - PREDICTED: serine/threonine-protein kinase EDR1-like [Jatropha curcas]
10 Hb_122968_010 0.0857069189 - - hypothetical protein JCGZ_23576 [Jatropha curcas]
11 Hb_006913_020 0.0863591594 - - PREDICTED: uncharacterized protein LOC105649145 isoform X1 [Jatropha curcas]
12 Hb_002883_030 0.0877876679 - - PREDICTED: uncharacterized protein LOC105638222 [Jatropha curcas]
13 Hb_000359_210 0.0884405984 - - conserved hypothetical protein [Ricinus communis]
14 Hb_008948_020 0.0885913125 - - hypothetical protein JCGZ_21216 [Jatropha curcas]
15 Hb_001080_300 0.0891750075 - - PREDICTED: F-box protein SKIP17-like [Jatropha curcas]
16 Hb_015099_030 0.0898008391 - - PREDICTED: uncharacterized protein LOC105649867 [Jatropha curcas]
17 Hb_000185_220 0.0898329371 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]
18 Hb_004957_030 0.0902627361 - - hydroxyproline-rich glycoprotein [Populus trichocarpa]
19 Hb_027073_020 0.0906681155 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
20 Hb_002897_090 0.0921099644 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_011224_050 Hb_011224_050 Hb_015675_040 Hb_015675_040 Hb_011224_050--Hb_015675_040 Hb_003878_150 Hb_003878_150 Hb_011224_050--Hb_003878_150 Hb_001195_400 Hb_001195_400 Hb_011224_050--Hb_001195_400 Hb_001975_150 Hb_001975_150 Hb_011224_050--Hb_001975_150 Hb_000504_180 Hb_000504_180 Hb_011224_050--Hb_000504_180 Hb_028487_160 Hb_028487_160 Hb_011224_050--Hb_028487_160 Hb_000080_130 Hb_000080_130 Hb_015675_040--Hb_000080_130 Hb_158530_020 Hb_158530_020 Hb_015675_040--Hb_158530_020 Hb_005976_080 Hb_005976_080 Hb_015675_040--Hb_005976_080 Hb_000840_200 Hb_000840_200 Hb_015675_040--Hb_000840_200 Hb_000185_220 Hb_000185_220 Hb_015675_040--Hb_000185_220 Hb_109000_020 Hb_109000_020 Hb_003878_150--Hb_109000_020 Hb_005725_130 Hb_005725_130 Hb_003878_150--Hb_005725_130 Hb_001662_100 Hb_001662_100 Hb_003878_150--Hb_001662_100 Hb_000256_150 Hb_000256_150 Hb_003878_150--Hb_000256_150 Hb_003883_060 Hb_003883_060 Hb_003878_150--Hb_003883_060 Hb_003878_150--Hb_001195_400 Hb_000078_140 Hb_000078_140 Hb_001195_400--Hb_000078_140 Hb_170138_010 Hb_170138_010 Hb_001195_400--Hb_170138_010 Hb_012733_040 Hb_012733_040 Hb_001195_400--Hb_012733_040 Hb_000359_210 Hb_000359_210 Hb_001195_400--Hb_000359_210 Hb_001195_400--Hb_000185_220 Hb_003206_110 Hb_003206_110 Hb_001195_400--Hb_003206_110 Hb_011537_060 Hb_011537_060 Hb_001975_150--Hb_011537_060 Hb_001975_150--Hb_000504_180 Hb_001975_150--Hb_000185_220 Hb_004218_180 Hb_004218_180 Hb_001975_150--Hb_004218_180 Hb_000635_060 Hb_000635_060 Hb_001975_150--Hb_000635_060 Hb_003517_070 Hb_003517_070 Hb_001975_150--Hb_003517_070 Hb_001716_040 Hb_001716_040 Hb_000504_180--Hb_001716_040 Hb_000504_180--Hb_158530_020 Hb_001951_220 Hb_001951_220 Hb_000504_180--Hb_001951_220 Hb_009296_080 Hb_009296_080 Hb_000504_180--Hb_009296_080 Hb_005582_040 Hb_005582_040 Hb_000504_180--Hb_005582_040 Hb_000227_160 Hb_000227_160 Hb_028487_160--Hb_000227_160 Hb_006452_120 Hb_006452_120 Hb_028487_160--Hb_006452_120 Hb_008748_030 Hb_008748_030 Hb_028487_160--Hb_008748_030 Hb_004994_020 Hb_004994_020 Hb_028487_160--Hb_004994_020 Hb_000367_090 Hb_000367_090 Hb_028487_160--Hb_000367_090 Hb_008289_040 Hb_008289_040 Hb_028487_160--Hb_008289_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.12272 16.2318 18.1127 28.9272 8.05263 19.372
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.7397 19.4762 14.0013 21.8796 32.9137

CAGE analysis