Hb_028487_160

Information

Type -
Description -
Location Contig28487: 150244-157702
Sequence    

Annotation

kegg
ID rcu:RCOM_0629240
description clathrin assembly protein, putative (EC:1.3.1.74)
nr
ID XP_002527787.1
description clathrin assembly protein, putative [Ricinus communis]
swissprot
ID Q8LBH2
description Putative clathrin assembly protein At2g01600 OS=Arabidopsis thaliana GN=At2g01600 PE=2 SV=2
trembl
ID B9SP68
description Clathrin assembly protein, putative OS=Ricinus communis GN=RCOM_0629240 PE=4 SV=1
Gene Ontology
ID GO:0030136
description clathrin assembly protein at2g01600

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29813: 152763-155742 , PASA_asmbl_29814: 150530-157655
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028487_160 0.0 - - clathrin assembly protein, putative [Ricinus communis]
2 Hb_000227_160 0.058484875 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A [Jatropha curcas]
3 Hb_006452_120 0.0638740637 - - PREDICTED: protein FAM188A [Jatropha curcas]
4 Hb_008748_030 0.0688511274 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004994_020 0.0688754992 - - PREDICTED: probable methyltransferase PMT13 [Jatropha curcas]
6 Hb_000367_090 0.0691796525 - - PREDICTED: plant intracellular Ras-group-related LRR protein 7 [Jatropha curcas]
7 Hb_008289_040 0.0702204397 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 1 [Jatropha curcas]
8 Hb_012114_100 0.0727849833 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
9 Hb_016172_030 0.0775233044 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Jatropha curcas]
10 Hb_001269_380 0.0781336167 - - PREDICTED: uncharacterized protein LOC105630320 isoform X1 [Jatropha curcas]
11 Hb_004705_170 0.0782101558 - - PREDICTED: ubiquitin thioesterase otubain-like [Jatropha curcas]
12 Hb_000139_080 0.0791994 - - PREDICTED: vacuole membrane protein KMS1 isoform X2 [Jatropha curcas]
13 Hb_000046_170 0.080381842 - - PREDICTED: uncharacterized protein LOC105631841 isoform X1 [Jatropha curcas]
14 Hb_001269_600 0.0807854114 - - protein phosphatase 2c, putative [Ricinus communis]
15 Hb_002042_050 0.0822127004 - - PREDICTED: uncharacterized protein LOC105647554 isoform X1 [Jatropha curcas]
16 Hb_000165_080 0.083266154 - - PREDICTED: multiple inositol polyphosphate phosphatase 1 isoform X1 [Jatropha curcas]
17 Hb_001811_170 0.0835283951 - - dynamin, putative [Ricinus communis]
18 Hb_001141_240 0.0843901776 - - PREDICTED: folate-biopterin transporter 1, chloroplastic [Jatropha curcas]
19 Hb_000363_190 0.0847733263 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-2-like isoform X1 [Jatropha curcas]
20 Hb_010515_020 0.0852362765 - - PREDICTED: protein transport protein SEC23-like [Jatropha curcas]

Gene co-expression network

sample Hb_028487_160 Hb_028487_160 Hb_000227_160 Hb_000227_160 Hb_028487_160--Hb_000227_160 Hb_006452_120 Hb_006452_120 Hb_028487_160--Hb_006452_120 Hb_008748_030 Hb_008748_030 Hb_028487_160--Hb_008748_030 Hb_004994_020 Hb_004994_020 Hb_028487_160--Hb_004994_020 Hb_000367_090 Hb_000367_090 Hb_028487_160--Hb_000367_090 Hb_008289_040 Hb_008289_040 Hb_028487_160--Hb_008289_040 Hb_000227_160--Hb_008748_030 Hb_012262_030 Hb_012262_030 Hb_000227_160--Hb_012262_030 Hb_000227_160--Hb_000367_090 Hb_000227_160--Hb_008289_040 Hb_000029_190 Hb_000029_190 Hb_000227_160--Hb_000029_190 Hb_010515_020 Hb_010515_020 Hb_006452_120--Hb_010515_020 Hb_004030_080 Hb_004030_080 Hb_006452_120--Hb_004030_080 Hb_000574_450 Hb_000574_450 Hb_006452_120--Hb_000574_450 Hb_006452_120--Hb_008748_030 Hb_000984_170 Hb_000984_170 Hb_006452_120--Hb_000984_170 Hb_000012_310 Hb_000012_310 Hb_006452_120--Hb_000012_310 Hb_008748_030--Hb_000012_310 Hb_008748_030--Hb_000574_450 Hb_000778_010 Hb_000778_010 Hb_008748_030--Hb_000778_010 Hb_016172_030 Hb_016172_030 Hb_004994_020--Hb_016172_030 Hb_012518_070 Hb_012518_070 Hb_004994_020--Hb_012518_070 Hb_003086_170 Hb_003086_170 Hb_004994_020--Hb_003086_170 Hb_028487_070 Hb_028487_070 Hb_004994_020--Hb_028487_070 Hb_000103_290 Hb_000103_290 Hb_004994_020--Hb_000103_290 Hb_000046_170 Hb_000046_170 Hb_000367_090--Hb_000046_170 Hb_002357_060 Hb_002357_060 Hb_000367_090--Hb_002357_060 Hb_004705_170 Hb_004705_170 Hb_000367_090--Hb_004705_170 Hb_189216_010 Hb_189216_010 Hb_000367_090--Hb_189216_010 Hb_021165_010 Hb_021165_010 Hb_008289_040--Hb_021165_010 Hb_008289_040--Hb_016172_030 Hb_000173_130 Hb_000173_130 Hb_008289_040--Hb_000173_130 Hb_065500_020 Hb_065500_020 Hb_008289_040--Hb_065500_020 Hb_000406_210 Hb_000406_210 Hb_008289_040--Hb_000406_210 Hb_000703_330 Hb_000703_330 Hb_008289_040--Hb_000703_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.78602 20.4177 20.0285 35.7254 11.7126 13.7732
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.1149 16.8842 15.002 25.7862 26.8515

CAGE analysis