Hb_000173_130

Information

Type -
Description -
Location Contig173: 99101-102947
Sequence    

Annotation

kegg
ID rcu:RCOM_0912640
description mahogunin, putative
nr
ID XP_012069524.1
description PREDICTED: probable E3 ubiquitin-protein ligase LUL4 isoform X1 [Jatropha curcas]
swissprot
ID Q8LA32
description Probable E3 ubiquitin-protein ligase LUL4 OS=Arabidopsis thaliana GN=LUL4 PE=2 SV=1
trembl
ID A0A067L6I0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02103 PE=4 SV=1
Gene Ontology
ID GO:0005515
description probable e3 ubiquitin-protein ligase lul4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16421: 99106-102560
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000173_130 0.0 - - PREDICTED: probable E3 ubiquitin-protein ligase LUL4 isoform X1 [Jatropha curcas]
2 Hb_008289_040 0.0620228151 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 1 [Jatropha curcas]
3 Hb_002445_030 0.0723441493 - - hypothetical protein JCGZ_12656 [Jatropha curcas]
4 Hb_002552_040 0.0801505474 - - PREDICTED: uncharacterized protein LOC105641220 [Jatropha curcas]
5 Hb_000703_330 0.0828212323 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000815_300 0.0861370015 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
7 Hb_016734_010 0.0863995962 - - PREDICTED: probable DNA-3-methyladenine glycosylase 2 [Jatropha curcas]
8 Hb_000406_210 0.0866979414 - - PREDICTED: protein HASTY 1 [Jatropha curcas]
9 Hb_001141_240 0.0867345249 - - PREDICTED: folate-biopterin transporter 1, chloroplastic [Jatropha curcas]
10 Hb_065968_010 0.0877866461 - - PREDICTED: probable glycosyltransferase At3g07620 isoform X2 [Jatropha curcas]
11 Hb_000227_160 0.08853699 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A [Jatropha curcas]
12 Hb_081599_010 0.0894755638 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003777_030 0.0896323514 - - Exocyst complex component, putative [Ricinus communis]
14 Hb_028487_160 0.0899790712 - - clathrin assembly protein, putative [Ricinus communis]
15 Hb_000027_200 0.0904120035 - - PREDICTED: uncharacterized protein LOC105642055 [Jatropha curcas]
16 Hb_007416_070 0.0915528319 transcription factor TF Family: B3 hypothetical protein JCGZ_07038 [Jatropha curcas]
17 Hb_001811_170 0.093166382 - - dynamin, putative [Ricinus communis]
18 Hb_001250_050 0.0942786927 - - PREDICTED: uncharacterized protein LOC105644623 isoform X1 [Jatropha curcas]
19 Hb_002042_050 0.0958218296 - - PREDICTED: uncharacterized protein LOC105647554 isoform X1 [Jatropha curcas]
20 Hb_000035_260 0.0970148936 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]

Gene co-expression network

sample Hb_000173_130 Hb_000173_130 Hb_008289_040 Hb_008289_040 Hb_000173_130--Hb_008289_040 Hb_002445_030 Hb_002445_030 Hb_000173_130--Hb_002445_030 Hb_002552_040 Hb_002552_040 Hb_000173_130--Hb_002552_040 Hb_000703_330 Hb_000703_330 Hb_000173_130--Hb_000703_330 Hb_000815_300 Hb_000815_300 Hb_000173_130--Hb_000815_300 Hb_016734_010 Hb_016734_010 Hb_000173_130--Hb_016734_010 Hb_021165_010 Hb_021165_010 Hb_008289_040--Hb_021165_010 Hb_016172_030 Hb_016172_030 Hb_008289_040--Hb_016172_030 Hb_065500_020 Hb_065500_020 Hb_008289_040--Hb_065500_020 Hb_000406_210 Hb_000406_210 Hb_008289_040--Hb_000406_210 Hb_008289_040--Hb_000703_330 Hb_006438_020 Hb_006438_020 Hb_002445_030--Hb_006438_020 Hb_013726_050 Hb_013726_050 Hb_002445_030--Hb_013726_050 Hb_002445_030--Hb_008289_040 Hb_002445_030--Hb_002552_040 Hb_002687_180 Hb_002687_180 Hb_002445_030--Hb_002687_180 Hb_002552_040--Hb_000815_300 Hb_002552_040--Hb_002687_180 Hb_004228_120 Hb_004228_120 Hb_002552_040--Hb_004228_120 Hb_001279_190 Hb_001279_190 Hb_002552_040--Hb_001279_190 Hb_065968_010 Hb_065968_010 Hb_002552_040--Hb_065968_010 Hb_006970_020 Hb_006970_020 Hb_002552_040--Hb_006970_020 Hb_007416_070 Hb_007416_070 Hb_000703_330--Hb_007416_070 Hb_000009_060 Hb_000009_060 Hb_000703_330--Hb_000009_060 Hb_000197_190 Hb_000197_190 Hb_000703_330--Hb_000197_190 Hb_000703_330--Hb_065968_010 Hb_002639_030 Hb_002639_030 Hb_000703_330--Hb_002639_030 Hb_000815_300--Hb_006970_020 Hb_000815_300--Hb_000406_210 Hb_000078_140 Hb_000078_140 Hb_000815_300--Hb_000078_140 Hb_001141_240 Hb_001141_240 Hb_000815_300--Hb_001141_240 Hb_074197_040 Hb_074197_040 Hb_000815_300--Hb_074197_040 Hb_004680_010 Hb_004680_010 Hb_016734_010--Hb_004680_010 Hb_006683_020 Hb_006683_020 Hb_016734_010--Hb_006683_020 Hb_016734_010--Hb_002445_030 Hb_009372_020 Hb_009372_020 Hb_016734_010--Hb_009372_020 Hb_027760_060 Hb_027760_060 Hb_016734_010--Hb_027760_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.73103 7.19692 10.0112 13.3082 3.66823 4.39131
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.30269 5.68291 5.36003 10.2734 9.4973

CAGE analysis