Hb_007416_070

Information

Type transcription factor
Description TF Family: B3
Location Contig7416: 46331-57545
Sequence    

Annotation

kegg
ID rcu:RCOM_0919620
description hypothetical protein
nr
ID KDP33467.1
description hypothetical protein JCGZ_07038 [Jatropha curcas]
swissprot
ID O23076
description Putative B3 domain-containing protein REM15 OS=Arabidopsis thaliana GN=REM15.15 PE=3 SV=2
trembl
ID A0A067KBF7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07038 PE=4 SV=1
Gene Ontology
ID GO:0003677
description b3 domain-containing protein rem14-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56410: 46367-57101 , PASA_asmbl_56411: 53033-56997 , PASA_asmbl_56413: 50034-52620 , PASA_asmbl_56414: 50034-52620
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007416_070 0.0 transcription factor TF Family: B3 hypothetical protein JCGZ_07038 [Jatropha curcas]
2 Hb_000703_330 0.06538856 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000683_050 0.0670818488 - - PREDICTED: probable carbohydrate esterase At4g34215 [Jatropha curcas]
4 Hb_000009_060 0.0766370667 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1B [Jatropha curcas]
5 Hb_000197_190 0.0785551308 - - PREDICTED: diaminopimelate decarboxylase 2, chloroplastic-like [Jatropha curcas]
6 Hb_000367_180 0.0821841544 - - Heparanase-2, putative [Ricinus communis]
7 Hb_001811_170 0.0823319984 - - dynamin, putative [Ricinus communis]
8 Hb_002486_080 0.0874286916 - - PREDICTED: cytosolic endo-beta-N-acetylglucosaminidase isoform X1 [Jatropha curcas]
9 Hb_002193_060 0.0876388071 - - PREDICTED: uncharacterized protein C4orf29 homolog [Pyrus x bretschneideri]
10 Hb_018845_010 0.0878104486 - - PREDICTED: uncharacterized protein LOC105642055 [Jatropha curcas]
11 Hb_001616_070 0.0882389394 - - PREDICTED: uncharacterized protein LOC105644365 [Jatropha curcas]
12 Hb_001301_280 0.0885374848 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000510_170 0.0888672844 - - Glycosyltransferase QUASIMODO1, putative [Ricinus communis]
14 Hb_000494_030 0.0891752207 - - PREDICTED: uncharacterized protein LOC105643196 [Jatropha curcas]
15 Hb_001951_060 0.0912252639 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG14 [Jatropha curcas]
16 Hb_002687_200 0.0915525758 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000173_130 0.0915528319 - - PREDICTED: probable E3 ubiquitin-protein ligase LUL4 isoform X1 [Jatropha curcas]
18 Hb_065968_010 0.0917392603 - - PREDICTED: probable glycosyltransferase At3g07620 isoform X2 [Jatropha curcas]
19 Hb_000260_510 0.0925561894 - - PREDICTED: probable galacturonosyltransferase 7 isoform X3 [Jatropha curcas]
20 Hb_000666_010 0.0935124155 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_007416_070 Hb_007416_070 Hb_000703_330 Hb_000703_330 Hb_007416_070--Hb_000703_330 Hb_000683_050 Hb_000683_050 Hb_007416_070--Hb_000683_050 Hb_000009_060 Hb_000009_060 Hb_007416_070--Hb_000009_060 Hb_000197_190 Hb_000197_190 Hb_007416_070--Hb_000197_190 Hb_000367_180 Hb_000367_180 Hb_007416_070--Hb_000367_180 Hb_001811_170 Hb_001811_170 Hb_007416_070--Hb_001811_170 Hb_008289_040 Hb_008289_040 Hb_000703_330--Hb_008289_040 Hb_000703_330--Hb_000009_060 Hb_000703_330--Hb_000197_190 Hb_065968_010 Hb_065968_010 Hb_000703_330--Hb_065968_010 Hb_002639_030 Hb_002639_030 Hb_000703_330--Hb_002639_030 Hb_000494_030 Hb_000494_030 Hb_000683_050--Hb_000494_030 Hb_004030_060 Hb_004030_060 Hb_000683_050--Hb_004030_060 Hb_000683_050--Hb_001811_170 Hb_010390_010 Hb_010390_010 Hb_000683_050--Hb_010390_010 Hb_005854_040 Hb_005854_040 Hb_000683_050--Hb_005854_040 Hb_001616_070 Hb_001616_070 Hb_000009_060--Hb_001616_070 Hb_001021_010 Hb_001021_010 Hb_000009_060--Hb_001021_010 Hb_018845_010 Hb_018845_010 Hb_000009_060--Hb_018845_010 Hb_000389_030 Hb_000389_030 Hb_000009_060--Hb_000389_030 Hb_001799_060 Hb_001799_060 Hb_000197_190--Hb_001799_060 Hb_000197_190--Hb_065968_010 Hb_001957_010 Hb_001957_010 Hb_000197_190--Hb_001957_010 Hb_000197_190--Hb_000009_060 Hb_019654_020 Hb_019654_020 Hb_000367_180--Hb_019654_020 Hb_000007_060 Hb_000007_060 Hb_000367_180--Hb_000007_060 Hb_000979_130 Hb_000979_130 Hb_000367_180--Hb_000979_130 Hb_000367_180--Hb_065968_010 Hb_015884_020 Hb_015884_020 Hb_000367_180--Hb_015884_020 Hb_000260_510 Hb_000260_510 Hb_000367_180--Hb_000260_510 Hb_001226_130 Hb_001226_130 Hb_001811_170--Hb_001226_130 Hb_000342_050 Hb_000342_050 Hb_001811_170--Hb_000342_050 Hb_001141_240 Hb_001141_240 Hb_001811_170--Hb_001141_240 Hb_006210_010 Hb_006210_010 Hb_001811_170--Hb_006210_010 Hb_001587_030 Hb_001587_030 Hb_001811_170--Hb_001587_030 Hb_001085_080 Hb_001085_080 Hb_001811_170--Hb_001085_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.07036 4.91949 7.51312 13.0306 1.98757 2.82462
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.64769 3.56298 3.94813 9.3656 8.20771

CAGE analysis