Hb_001799_060

Information

Type -
Description -
Location Contig1799: 66278-71176
Sequence    

Annotation

kegg
ID cit:102624523
description ras-related protein RABD2a-like
nr
ID AGL52581.1
description Rab6 [Hevea brasiliensis]
swissprot
ID P28188
description Ras-related protein RABD2a OS=Arabidopsis thaliana GN=RABD2A PE=1 SV=3
trembl
ID A0A023HJ72
description Rab6 OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0005622
description gtp-binding protein yptm2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17386: 66279-71165
cDNA
(Sanger)
(ID:Location)		 005_P05.ab1: 66473-71165 , 009_G03.ab1: 67191-71165

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001799_060 0.0 - - Rab6 [Hevea brasiliensis]
2 Hb_000197_190 0.0749391644 - - PREDICTED: diaminopimelate decarboxylase 2, chloroplastic-like [Jatropha curcas]
3 Hb_001946_310 0.0841321137 - - PREDICTED: probable ethanolamine kinase isoform X2 [Jatropha curcas]
4 Hb_005648_010 0.0866055351 - - PREDICTED: malate dehydrogenase, glyoxysomal isoform X1 [Jatropha curcas]
5 Hb_000800_090 0.0999897744 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial [Jatropha curcas]
6 Hb_004880_150 0.1017981004 - - PREDICTED: uncharacterized protein LOC105632834 [Jatropha curcas]
7 Hb_000165_080 0.1026438405 - - PREDICTED: multiple inositol polyphosphate phosphatase 1 isoform X1 [Jatropha curcas]
8 Hb_002093_060 0.1037790113 - - phosphoprotein phosphatase, putative [Ricinus communis]
9 Hb_001951_060 0.1060573548 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG14 [Jatropha curcas]
10 Hb_007416_070 0.1064182803 transcription factor TF Family: B3 hypothetical protein JCGZ_07038 [Jatropha curcas]
11 Hb_001221_020 0.1072094056 - - PREDICTED: probable aspartyl aminopeptidase [Jatropha curcas]
12 Hb_000703_330 0.1074256623 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001510_020 0.1081596065 - - Diaminopimelate epimerase, putative [Ricinus communis]
14 Hb_002477_290 0.109564339 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [Jatropha curcas]
15 Hb_005701_120 0.1139419478 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit [Cucumis sativus]
16 Hb_001957_010 0.1146786107 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g14410 isoform X1 [Jatropha curcas]
17 Hb_003988_050 0.116049727 - - PREDICTED: zinc finger protein-like 1 homolog [Jatropha curcas]
18 Hb_001318_050 0.1169036526 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
19 Hb_000009_060 0.1175599054 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1B [Jatropha curcas]
20 Hb_002486_080 0.1182577196 - - PREDICTED: cytosolic endo-beta-N-acetylglucosaminidase isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001799_060 Hb_001799_060 Hb_000197_190 Hb_000197_190 Hb_001799_060--Hb_000197_190 Hb_001946_310 Hb_001946_310 Hb_001799_060--Hb_001946_310 Hb_005648_010 Hb_005648_010 Hb_001799_060--Hb_005648_010 Hb_000800_090 Hb_000800_090 Hb_001799_060--Hb_000800_090 Hb_004880_150 Hb_004880_150 Hb_001799_060--Hb_004880_150 Hb_000165_080 Hb_000165_080 Hb_001799_060--Hb_000165_080 Hb_065968_010 Hb_065968_010 Hb_000197_190--Hb_065968_010 Hb_000703_330 Hb_000703_330 Hb_000197_190--Hb_000703_330 Hb_001957_010 Hb_001957_010 Hb_000197_190--Hb_001957_010 Hb_000009_060 Hb_000009_060 Hb_000197_190--Hb_000009_060 Hb_007416_070 Hb_007416_070 Hb_000197_190--Hb_007416_070 Hb_001946_310--Hb_000800_090 Hb_000402_130 Hb_000402_130 Hb_001946_310--Hb_000402_130 Hb_001318_050 Hb_001318_050 Hb_001946_310--Hb_001318_050 Hb_003305_020 Hb_003305_020 Hb_001946_310--Hb_003305_020 Hb_000025_190 Hb_000025_190 Hb_001946_310--Hb_000025_190 Hb_002093_060 Hb_002093_060 Hb_005648_010--Hb_002093_060 Hb_002357_060 Hb_002357_060 Hb_005648_010--Hb_002357_060 Hb_005648_010--Hb_004880_150 Hb_000115_150 Hb_000115_150 Hb_005648_010--Hb_000115_150 Hb_005648_010--Hb_000025_190 Hb_000120_370 Hb_000120_370 Hb_005648_010--Hb_000120_370 Hb_005701_120 Hb_005701_120 Hb_000800_090--Hb_005701_120 Hb_000800_090--Hb_000025_190 Hb_004046_030 Hb_004046_030 Hb_000800_090--Hb_004046_030 Hb_000185_220 Hb_000185_220 Hb_000800_090--Hb_000185_220 Hb_000800_090--Hb_005648_010 Hb_001221_020 Hb_001221_020 Hb_004880_150--Hb_001221_020 Hb_003776_060 Hb_003776_060 Hb_004880_150--Hb_003776_060 Hb_002477_290 Hb_002477_290 Hb_004880_150--Hb_002477_290 Hb_002811_100 Hb_002811_100 Hb_004880_150--Hb_002811_100 Hb_004880_150--Hb_000025_190 Hb_003988_050 Hb_003988_050 Hb_000165_080--Hb_003988_050 Hb_000367_090 Hb_000367_090 Hb_000165_080--Hb_000367_090 Hb_000165_080--Hb_000703_330 Hb_000046_170 Hb_000046_170 Hb_000165_080--Hb_000046_170 Hb_028487_160 Hb_028487_160 Hb_000165_080--Hb_028487_160 Hb_000227_160 Hb_000227_160 Hb_000165_080--Hb_000227_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.42303 12.281 26.3523 52.3322 8.20875 14.3643
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.4179 26.448 13.7791 47.9445 29.4131

CAGE analysis