Hb_001318_050

Information

Type -
Description -
Location Contig1318: 55926-60790
Sequence    

Annotation

kegg
ID rcu:RCOM_1343920
description Serine/threonine-protein kinase PBS1, putative (EC:2.7.11.25)
nr
ID XP_002515200.1
description Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
swissprot
ID Q41328
description Pto-interacting protein 1 OS=Solanum lycopersicum GN=PTI1 PE=1 SV=2
trembl
ID B9RN61
description Serine/threonine-protein kinase PBS1, putative OS=Ricinus communis GN=RCOM_1343920 PE=3 SV=1
Gene Ontology
ID GO:0004672
description pto-interacting protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09194: 56023-60740 , PASA_asmbl_09195: 60093-60295
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001318_050 0.0 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
2 Hb_007383_020 0.0682184743 - - conserved hypothetical protein [Ricinus communis]
3 Hb_005648_010 0.0950378316 - - PREDICTED: malate dehydrogenase, glyoxysomal isoform X1 [Jatropha curcas]
4 Hb_000025_190 0.0954150215 - - 26S proteasome non-atpase regulatory subunit, putative [Ricinus communis]
5 Hb_012678_020 0.1007897334 - - PREDICTED: outer envelope protein 61 isoform X1 [Jatropha curcas]
6 Hb_004880_150 0.1008033279 - - PREDICTED: uncharacterized protein LOC105632834 [Jatropha curcas]
7 Hb_000800_090 0.1010783789 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial [Jatropha curcas]
8 Hb_005914_140 0.1030774434 - - PREDICTED: uncharacterized protein LOC105632183 [Jatropha curcas]
9 Hb_001946_310 0.1035304424 - - PREDICTED: probable ethanolamine kinase isoform X2 [Jatropha curcas]
10 Hb_001221_020 0.1049723749 - - PREDICTED: probable aspartyl aminopeptidase [Jatropha curcas]
11 Hb_000928_190 0.1082498211 - - PREDICTED: putative acyl-activating enzyme 19 isoform X1 [Jatropha curcas]
12 Hb_000227_070 0.1097431084 - - PREDICTED: ATP-dependent (S)-NAD(P)H-hydrate dehydratase isoform X2 [Jatropha curcas]
13 Hb_000159_120 0.1110282033 - - PREDICTED: uncharacterized protein LOC105632857 [Jatropha curcas]
14 Hb_001104_230 0.1120908763 - - PREDICTED: fructose-bisphosphate aldolase cytoplasmic isozyme [Jatropha curcas]
15 Hb_002093_060 0.1125978194 - - phosphoprotein phosphatase, putative [Ricinus communis]
16 Hb_132880_040 0.1136663584 - - PREDICTED: protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1-like isoform X2 [Jatropha curcas]
17 Hb_002357_060 0.1142749339 - - hypothetical protein CICLE_v10006112mg [Citrus clementina]
18 Hb_000381_110 0.1167339589 - - PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like isoform X2 [Jatropha curcas]
19 Hb_001799_060 0.1169036526 - - Rab6 [Hevea brasiliensis]
20 Hb_007558_100 0.1175378024 - - PREDICTED: uncharacterized protein LOC105649092 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001318_050 Hb_001318_050 Hb_007383_020 Hb_007383_020 Hb_001318_050--Hb_007383_020 Hb_005648_010 Hb_005648_010 Hb_001318_050--Hb_005648_010 Hb_000025_190 Hb_000025_190 Hb_001318_050--Hb_000025_190 Hb_012678_020 Hb_012678_020 Hb_001318_050--Hb_012678_020 Hb_004880_150 Hb_004880_150 Hb_001318_050--Hb_004880_150 Hb_000800_090 Hb_000800_090 Hb_001318_050--Hb_000800_090 Hb_007383_020--Hb_005648_010 Hb_007383_020--Hb_000025_190 Hb_007383_020--Hb_012678_020 Hb_007383_020--Hb_000800_090 Hb_000115_150 Hb_000115_150 Hb_007383_020--Hb_000115_150 Hb_002093_060 Hb_002093_060 Hb_005648_010--Hb_002093_060 Hb_002357_060 Hb_002357_060 Hb_005648_010--Hb_002357_060 Hb_005648_010--Hb_004880_150 Hb_005648_010--Hb_000115_150 Hb_005648_010--Hb_000025_190 Hb_000120_370 Hb_000120_370 Hb_005648_010--Hb_000120_370 Hb_062537_010 Hb_062537_010 Hb_000025_190--Hb_062537_010 Hb_002660_170 Hb_002660_170 Hb_000025_190--Hb_002660_170 Hb_000025_190--Hb_004880_150 Hb_003988_050 Hb_003988_050 Hb_000025_190--Hb_003988_050 Hb_000025_190--Hb_000115_150 Hb_007558_100 Hb_007558_100 Hb_012678_020--Hb_007558_100 Hb_012678_020--Hb_002093_060 Hb_004046_030 Hb_004046_030 Hb_012678_020--Hb_004046_030 Hb_012678_020--Hb_000800_090 Hb_003206_110 Hb_003206_110 Hb_012678_020--Hb_003206_110 Hb_001221_020 Hb_001221_020 Hb_004880_150--Hb_001221_020 Hb_003776_060 Hb_003776_060 Hb_004880_150--Hb_003776_060 Hb_002477_290 Hb_002477_290 Hb_004880_150--Hb_002477_290 Hb_002811_100 Hb_002811_100 Hb_004880_150--Hb_002811_100 Hb_005701_120 Hb_005701_120 Hb_000800_090--Hb_005701_120 Hb_000800_090--Hb_000025_190 Hb_001946_310 Hb_001946_310 Hb_000800_090--Hb_001946_310 Hb_000800_090--Hb_004046_030 Hb_000185_220 Hb_000185_220 Hb_000800_090--Hb_000185_220 Hb_000800_090--Hb_005648_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.25111 7.85126 6.82837 27.1528 4.02404 10.0302
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.5478 12.493 11.112 30.9161 16.3017

CAGE analysis