Hb_003305_020

Information

Type -
Description -
Location Contig3305: 10607-29573
Sequence    

Annotation

kegg
ID rcu:RCOM_0864940
description DNA binding protein, putative
nr
ID XP_012088030.1
description PREDICTED: AT-hook motif nuclear-localized protein 13-like [Jatropha curcas]
swissprot
ID Q940I0
description AT-hook motif nuclear-localized protein 13 OS=Arabidopsis thaliana GN=AHL13 PE=1 SV=1
trembl
ID A0A067JNN3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26547 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34739: 15451-29751
cDNA
(Sanger)
(ID:Location)		 016_A13.ab1: 29073-29751

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003305_020 0.0 - - PREDICTED: AT-hook motif nuclear-localized protein 13-like [Jatropha curcas]
2 Hb_001946_310 0.1056803273 - - PREDICTED: probable ethanolamine kinase isoform X2 [Jatropha curcas]
3 Hb_012022_050 0.1159326281 - - hypothetical protein EUGRSUZ_B02804 [Eucalyptus grandis]
4 Hb_002660_170 0.1182843668 - - PREDICTED: dystrophia myotonica WD repeat-containing protein isoform X2 [Jatropha curcas]
5 Hb_001318_050 0.1200792761 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
6 Hb_010997_090 0.1224827654 transcription factor TF Family: mTERF hypothetical protein PRUPE_ppa019510mg, partial [Prunus persica]
7 Hb_000025_190 0.124348836 - - 26S proteasome non-atpase regulatory subunit, putative [Ricinus communis]
8 Hb_001799_060 0.1252988068 - - Rab6 [Hevea brasiliensis]
9 Hb_002477_010 0.1270154521 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000723_170 0.1287302995 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
11 Hb_010560_050 0.132500561 - - PREDICTED: acyl-protein thioesterase 1-like [Jatropha curcas]
12 Hb_004880_150 0.1331989391 - - PREDICTED: uncharacterized protein LOC105632834 [Jatropha curcas]
13 Hb_000402_130 0.1341461957 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
14 Hb_004607_070 0.1354721165 - - integral membrane protein, putative [Ricinus communis]
15 Hb_000800_090 0.1373049484 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial [Jatropha curcas]
16 Hb_000928_190 0.1375154411 - - PREDICTED: putative acyl-activating enzyme 19 isoform X1 [Jatropha curcas]
17 Hb_007383_020 0.1379422382 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004007_110 0.138249803 - - PREDICTED: mitochondrial outer membrane protein porin 2-like [Jatropha curcas]
19 Hb_000563_200 0.1386949167 - - hypothetical protein JCGZ_18930 [Jatropha curcas]
20 Hb_001510_020 0.1390422641 - - Diaminopimelate epimerase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003305_020 Hb_003305_020 Hb_001946_310 Hb_001946_310 Hb_003305_020--Hb_001946_310 Hb_012022_050 Hb_012022_050 Hb_003305_020--Hb_012022_050 Hb_002660_170 Hb_002660_170 Hb_003305_020--Hb_002660_170 Hb_001318_050 Hb_001318_050 Hb_003305_020--Hb_001318_050 Hb_010997_090 Hb_010997_090 Hb_003305_020--Hb_010997_090 Hb_000025_190 Hb_000025_190 Hb_003305_020--Hb_000025_190 Hb_000800_090 Hb_000800_090 Hb_001946_310--Hb_000800_090 Hb_001799_060 Hb_001799_060 Hb_001946_310--Hb_001799_060 Hb_000402_130 Hb_000402_130 Hb_001946_310--Hb_000402_130 Hb_001946_310--Hb_001318_050 Hb_001946_310--Hb_000025_190 Hb_002477_010 Hb_002477_010 Hb_012022_050--Hb_002477_010 Hb_007383_020 Hb_007383_020 Hb_012022_050--Hb_007383_020 Hb_032920_070 Hb_032920_070 Hb_012022_050--Hb_032920_070 Hb_012022_050--Hb_001946_310 Hb_000297_120 Hb_000297_120 Hb_012022_050--Hb_000297_120 Hb_005648_010 Hb_005648_010 Hb_012022_050--Hb_005648_010 Hb_002660_170--Hb_000025_190 Hb_007218_120 Hb_007218_120 Hb_002660_170--Hb_007218_120 Hb_006059_010 Hb_006059_010 Hb_002660_170--Hb_006059_010 Hb_000060_050 Hb_000060_050 Hb_002660_170--Hb_000060_050 Hb_000012_310 Hb_000012_310 Hb_002660_170--Hb_000012_310 Hb_002477_290 Hb_002477_290 Hb_002660_170--Hb_002477_290 Hb_001318_050--Hb_007383_020 Hb_001318_050--Hb_005648_010 Hb_001318_050--Hb_000025_190 Hb_012678_020 Hb_012678_020 Hb_001318_050--Hb_012678_020 Hb_004880_150 Hb_004880_150 Hb_001318_050--Hb_004880_150 Hb_001318_050--Hb_000800_090 Hb_001489_110 Hb_001489_110 Hb_010997_090--Hb_001489_110 Hb_010997_090--Hb_000060_050 Hb_066842_010 Hb_066842_010 Hb_010997_090--Hb_066842_010 Hb_010997_090--Hb_002660_170 Hb_001269_190 Hb_001269_190 Hb_010997_090--Hb_001269_190 Hb_000590_120 Hb_000590_120 Hb_010997_090--Hb_000590_120 Hb_062537_010 Hb_062537_010 Hb_000025_190--Hb_062537_010 Hb_000025_190--Hb_004880_150 Hb_000025_190--Hb_005648_010 Hb_003988_050 Hb_003988_050 Hb_000025_190--Hb_003988_050 Hb_000115_150 Hb_000115_150 Hb_000025_190--Hb_000115_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.668022 2.30735 2.17568 9.20576 0.704554 2.58646
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.15895 5.91785 3.03791 6.44636 3.85247

CAGE analysis