Hb_012022_050

Information

Type -
Description -
Location Contig12022: 67656-70430
Sequence    

Annotation

kegg
ID gmx:100788861
description symplekin-like
nr
ID KCW86106.1
description hypothetical protein EUGRSUZ_B02804 [Eucalyptus grandis]
swissprot
ID Q92797
description Symplekin OS=Homo sapiens GN=SYMPK PE=1 SV=2
trembl
ID A0A059D6R4
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B02804 PE=4 SV=1
Gene Ontology
ID GO:0005847
description heat repeat-containing protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06266: 67315-67960 , PASA_asmbl_06267: 67968-84089 , PASA_asmbl_06268: 68560-68921 , PASA_asmbl_06269: 70016-84089
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012022_050 0.0 - - hypothetical protein EUGRSUZ_B02804 [Eucalyptus grandis]
2 Hb_002477_010 0.096804233 - - conserved hypothetical protein [Ricinus communis]
3 Hb_007383_020 0.0981309731 - - conserved hypothetical protein [Ricinus communis]
4 Hb_032920_070 0.1077304574 - - PREDICTED: zinc finger protein-like 1 homolog [Jatropha curcas]
5 Hb_001946_310 0.1135725933 - - PREDICTED: probable ethanolamine kinase isoform X2 [Jatropha curcas]
6 Hb_000297_120 0.1149669741 - - PREDICTED: sorting nexin 1 [Jatropha curcas]
7 Hb_005648_010 0.1155636627 - - PREDICTED: malate dehydrogenase, glyoxysomal isoform X1 [Jatropha curcas]
8 Hb_000800_090 0.1155947444 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial [Jatropha curcas]
9 Hb_003305_020 0.1159326281 - - PREDICTED: AT-hook motif nuclear-localized protein 13-like [Jatropha curcas]
10 Hb_158163_010 0.1164033926 - - protein binding protein, putative [Ricinus communis]
11 Hb_004607_070 0.1191163159 - - integral membrane protein, putative [Ricinus communis]
12 Hb_066842_010 0.1201687597 - - PREDICTED: probable 6-phosphogluconolactonase 4, chloroplastic [Jatropha curcas]
13 Hb_001799_060 0.1207777602 - - Rab6 [Hevea brasiliensis]
14 Hb_000288_020 0.1221061366 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002481_060 0.1228132259 - - PREDICTED: uncharacterized protein LOC105640851 [Jatropha curcas]
16 Hb_020390_010 0.1232428285 - - PREDICTED: expansin-A13 [Jatropha curcas]
17 Hb_000525_090 0.1233174079 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
18 Hb_004881_030 0.1234438963 - - PREDICTED: uncharacterized protein LOC105629532 isoform X1 [Jatropha curcas]
19 Hb_001318_050 0.1259688748 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
20 Hb_002392_010 0.1264334261 - - PREDICTED: apurinic endonuclease-redox protein isoform X4 [Jatropha curcas]

Gene co-expression network

sample Hb_012022_050 Hb_012022_050 Hb_002477_010 Hb_002477_010 Hb_012022_050--Hb_002477_010 Hb_007383_020 Hb_007383_020 Hb_012022_050--Hb_007383_020 Hb_032920_070 Hb_032920_070 Hb_012022_050--Hb_032920_070 Hb_001946_310 Hb_001946_310 Hb_012022_050--Hb_001946_310 Hb_000297_120 Hb_000297_120 Hb_012022_050--Hb_000297_120 Hb_005648_010 Hb_005648_010 Hb_012022_050--Hb_005648_010 Hb_000288_020 Hb_000288_020 Hb_002477_010--Hb_000288_020 Hb_002876_020 Hb_002876_020 Hb_002477_010--Hb_002876_020 Hb_003305_020 Hb_003305_020 Hb_002477_010--Hb_003305_020 Hb_002477_010--Hb_032920_070 Hb_009680_020 Hb_009680_020 Hb_002477_010--Hb_009680_020 Hb_001318_050 Hb_001318_050 Hb_007383_020--Hb_001318_050 Hb_007383_020--Hb_005648_010 Hb_000025_190 Hb_000025_190 Hb_007383_020--Hb_000025_190 Hb_012678_020 Hb_012678_020 Hb_007383_020--Hb_012678_020 Hb_000800_090 Hb_000800_090 Hb_007383_020--Hb_000800_090 Hb_000115_150 Hb_000115_150 Hb_007383_020--Hb_000115_150 Hb_020390_010 Hb_020390_010 Hb_032920_070--Hb_020390_010 Hb_002110_100 Hb_002110_100 Hb_032920_070--Hb_002110_100 Hb_032920_070--Hb_000297_120 Hb_002392_010 Hb_002392_010 Hb_032920_070--Hb_002392_010 Hb_015057_020 Hb_015057_020 Hb_032920_070--Hb_015057_020 Hb_000185_220 Hb_000185_220 Hb_032920_070--Hb_000185_220 Hb_001946_310--Hb_000800_090 Hb_001799_060 Hb_001799_060 Hb_001946_310--Hb_001799_060 Hb_000402_130 Hb_000402_130 Hb_001946_310--Hb_000402_130 Hb_001946_310--Hb_001318_050 Hb_001946_310--Hb_003305_020 Hb_001946_310--Hb_000025_190 Hb_000297_120--Hb_000185_220 Hb_006683_070 Hb_006683_070 Hb_000297_120--Hb_006683_070 Hb_001307_030 Hb_001307_030 Hb_000297_120--Hb_001307_030 Hb_006059_010 Hb_006059_010 Hb_000297_120--Hb_006059_010 Hb_002660_170 Hb_002660_170 Hb_000297_120--Hb_002660_170 Hb_002093_060 Hb_002093_060 Hb_005648_010--Hb_002093_060 Hb_002357_060 Hb_002357_060 Hb_005648_010--Hb_002357_060 Hb_004880_150 Hb_004880_150 Hb_005648_010--Hb_004880_150 Hb_005648_010--Hb_000115_150 Hb_005648_010--Hb_000025_190 Hb_000120_370 Hb_000120_370 Hb_005648_010--Hb_000120_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.06574 1.49037 3.17219 10.5679 1.25084 3.30417
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.48015 6.08906 3.36133 7.67866 8.58857

CAGE analysis