Hb_009680_020

Information

Type -
Description -
Location Contig9680: 22529-24872
Sequence    

Annotation

kegg
ID rcu:RCOM_1688110
description 40S ribosomal protein S10, putative
nr
ID XP_012086830.1
description PREDICTED: 40S ribosomal protein S10 [Jatropha curcas]
swissprot
ID Q9SW09
description 40S ribosomal protein S10-1 OS=Arabidopsis thaliana GN=RPS10A PE=2 SV=1
trembl
ID A0A067K0R0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20545 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s10-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63919: 22591-24919
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009680_020 0.0 - - PREDICTED: 40S ribosomal protein S10 [Jatropha curcas]
2 Hb_017987_030 0.1151087838 - - PREDICTED: uncharacterized protein LOC105630796 [Jatropha curcas]
3 Hb_000107_150 0.122649037 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
4 Hb_000110_250 0.1278735961 - - PREDICTED: homologous-pairing protein 2 homolog [Jatropha curcas]
5 Hb_000179_270 0.1284819292 - - hypothetical protein JCGZ_07444 [Jatropha curcas]
6 Hb_000733_190 0.1290514121 - - zinc ion binding protein, putative [Ricinus communis]
7 Hb_002477_010 0.1298683423 - - conserved hypothetical protein [Ricinus communis]
8 Hb_007827_010 0.1312114209 - - PREDICTED: uncharacterized protein C12B10.15c [Jatropha curcas]
9 Hb_002481_060 0.1323884121 - - PREDICTED: uncharacterized protein LOC105640851 [Jatropha curcas]
10 Hb_087749_010 0.1355856542 - - PREDICTED: uncharacterized protein LOC105631194 isoform X1 [Jatropha curcas]
11 Hb_002272_270 0.1360453516 - - hypothetical protein POPTR_0013s02780g [Populus trichocarpa]
12 Hb_002518_210 0.1375764822 - - PREDICTED: mitochondrial uncoupling protein 2 [Jatropha curcas]
13 Hb_000087_070 0.1380670038 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
14 Hb_011330_020 0.1386333447 transcription factor TF Family: ARID transcription factor, putative [Ricinus communis]
15 Hb_002609_200 0.1388387376 - - PREDICTED: anthranilate synthase alpha subunit 2, chloroplastic isoform X2 [Jatropha curcas]
16 Hb_001189_070 0.139168755 - - PREDICTED: ribosome production factor 1 [Jatropha curcas]
17 Hb_001353_010 0.1400879371 - - PREDICTED: cytochrome c oxidase assembly protein COX11, mitochondrial [Jatropha curcas]
18 Hb_004709_010 0.1412266776 - - hypothetical protein B456_007G097300 [Gossypium raimondii]
19 Hb_001301_050 0.1433964084 - - -
20 Hb_045003_010 0.1440776211 - - Stomatin-1, putative [Ricinus communis]

Gene co-expression network

sample Hb_009680_020 Hb_009680_020 Hb_017987_030 Hb_017987_030 Hb_009680_020--Hb_017987_030 Hb_000107_150 Hb_000107_150 Hb_009680_020--Hb_000107_150 Hb_000110_250 Hb_000110_250 Hb_009680_020--Hb_000110_250 Hb_000179_270 Hb_000179_270 Hb_009680_020--Hb_000179_270 Hb_000733_190 Hb_000733_190 Hb_009680_020--Hb_000733_190 Hb_002477_010 Hb_002477_010 Hb_009680_020--Hb_002477_010 Hb_002014_030 Hb_002014_030 Hb_017987_030--Hb_002014_030 Hb_012055_030 Hb_012055_030 Hb_017987_030--Hb_012055_030 Hb_007192_070 Hb_007192_070 Hb_017987_030--Hb_007192_070 Hb_017987_030--Hb_000110_250 Hb_000840_200 Hb_000840_200 Hb_017987_030--Hb_000840_200 Hb_000075_040 Hb_000075_040 Hb_017987_030--Hb_000075_040 Hb_007827_010 Hb_007827_010 Hb_000107_150--Hb_007827_010 Hb_001240_010 Hb_001240_010 Hb_000107_150--Hb_001240_010 Hb_002872_050 Hb_002872_050 Hb_000107_150--Hb_002872_050 Hb_001728_060 Hb_001728_060 Hb_000107_150--Hb_001728_060 Hb_003020_260 Hb_003020_260 Hb_000107_150--Hb_003020_260 Hb_014720_110 Hb_014720_110 Hb_000107_150--Hb_014720_110 Hb_000069_720 Hb_000069_720 Hb_000110_250--Hb_000069_720 Hb_003678_020 Hb_003678_020 Hb_000110_250--Hb_003678_020 Hb_189216_020 Hb_189216_020 Hb_000110_250--Hb_189216_020 Hb_011330_020 Hb_011330_020 Hb_000110_250--Hb_011330_020 Hb_007894_060 Hb_007894_060 Hb_000110_250--Hb_007894_060 Hb_000110_250--Hb_007827_010 Hb_000087_070 Hb_000087_070 Hb_000179_270--Hb_000087_070 Hb_002272_270 Hb_002272_270 Hb_000179_270--Hb_002272_270 Hb_002820_020 Hb_002820_020 Hb_000179_270--Hb_002820_020 Hb_001189_070 Hb_001189_070 Hb_000179_270--Hb_001189_070 Hb_002042_150 Hb_002042_150 Hb_000179_270--Hb_002042_150 Hb_001269_190 Hb_001269_190 Hb_000179_270--Hb_001269_190 Hb_000599_200 Hb_000599_200 Hb_000733_190--Hb_000599_200 Hb_001242_120 Hb_001242_120 Hb_000733_190--Hb_001242_120 Hb_001051_050 Hb_001051_050 Hb_000733_190--Hb_001051_050 Hb_012733_040 Hb_012733_040 Hb_000733_190--Hb_012733_040 Hb_002928_090 Hb_002928_090 Hb_000733_190--Hb_002928_090 Hb_012022_050 Hb_012022_050 Hb_002477_010--Hb_012022_050 Hb_000288_020 Hb_000288_020 Hb_002477_010--Hb_000288_020 Hb_002876_020 Hb_002876_020 Hb_002477_010--Hb_002876_020 Hb_003305_020 Hb_003305_020 Hb_002477_010--Hb_003305_020 Hb_032920_070 Hb_032920_070 Hb_002477_010--Hb_032920_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.76411 3.44378 13.5835 27.9063 7.50391 15.3713
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.2016 35.1061 5.3367 18.5029 26.2101

CAGE analysis