Hb_000288_020

Information

Type -
Description -
Location Contig288: 19344-23936
Sequence    

Annotation

kegg
ID rcu:RCOM_0926010
description hypothetical protein
nr
ID XP_002515574.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID F6HH45
description tRNA (guanine(37)-N1)-methyltransferase 2 OS=Vitis vinifera GN=VIT_11s0016g04350 PE=3 SV=1
trembl
ID B9RPA5
description tRNA (guanine(37)-N1)-methyltransferase OS=Ricinus communis GN=RCOM_0926010 PE=3 SV=1
Gene Ontology
ID GO:0043231
description trna (guanine -n1)-methyltransferase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000288_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_020390_010 0.0864463776 - - PREDICTED: expansin-A13 [Jatropha curcas]
3 Hb_032920_070 0.1003451625 - - PREDICTED: zinc finger protein-like 1 homolog [Jatropha curcas]
4 Hb_002477_010 0.1057382753 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004007_110 0.1170068472 - - PREDICTED: mitochondrial outer membrane protein porin 2-like [Jatropha curcas]
6 Hb_015057_020 0.1171463294 - - PREDICTED: E3 SUMO-protein ligase MMS21 [Jatropha curcas]
7 Hb_002110_100 0.1187578587 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic [Jatropha curcas]
8 Hb_006683_070 0.1208029428 - - PREDICTED: uncharacterized protein LOC105631443 [Jatropha curcas]
9 Hb_012022_050 0.1221061366 - - hypothetical protein EUGRSUZ_B02804 [Eucalyptus grandis]
10 Hb_002392_010 0.1241315336 - - PREDICTED: apurinic endonuclease-redox protein isoform X4 [Jatropha curcas]
11 Hb_001301_280 0.1258960696 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000590_120 0.1272388016 - - dehydroascorbate reductase, putative [Ricinus communis]
13 Hb_029920_060 0.1284489809 - - PREDICTED: UPF0554 protein-like isoform X2 [Jatropha curcas]
14 Hb_000240_030 0.1303809995 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000120_770 0.1318946527 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001369_790 0.1324543952 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic [Jatropha curcas]
17 Hb_004158_020 0.1328681849 - - Rab1 [Hevea brasiliensis]
18 Hb_004607_070 0.1336646731 - - integral membrane protein, putative [Ricinus communis]
19 Hb_003875_030 0.1366373924 - - PREDICTED: probable plastidic glucose transporter 1 [Jatropha curcas]
20 Hb_007192_030 0.1367059783 - - PREDICTED: manganese-dependent ADP-ribose/CDP-alcohol diphosphatase [Jatropha curcas]

Gene co-expression network

sample Hb_000288_020 Hb_000288_020 Hb_020390_010 Hb_020390_010 Hb_000288_020--Hb_020390_010 Hb_032920_070 Hb_032920_070 Hb_000288_020--Hb_032920_070 Hb_002477_010 Hb_002477_010 Hb_000288_020--Hb_002477_010 Hb_004007_110 Hb_004007_110 Hb_000288_020--Hb_004007_110 Hb_015057_020 Hb_015057_020 Hb_000288_020--Hb_015057_020 Hb_002110_100 Hb_002110_100 Hb_000288_020--Hb_002110_100 Hb_020390_010--Hb_032920_070 Hb_005701_120 Hb_005701_120 Hb_020390_010--Hb_005701_120 Hb_020390_010--Hb_002110_100 Hb_006683_070 Hb_006683_070 Hb_020390_010--Hb_006683_070 Hb_000046_170 Hb_000046_170 Hb_020390_010--Hb_000046_170 Hb_032920_070--Hb_002110_100 Hb_000297_120 Hb_000297_120 Hb_032920_070--Hb_000297_120 Hb_002392_010 Hb_002392_010 Hb_032920_070--Hb_002392_010 Hb_032920_070--Hb_015057_020 Hb_000185_220 Hb_000185_220 Hb_032920_070--Hb_000185_220 Hb_012022_050 Hb_012022_050 Hb_002477_010--Hb_012022_050 Hb_002876_020 Hb_002876_020 Hb_002477_010--Hb_002876_020 Hb_003305_020 Hb_003305_020 Hb_002477_010--Hb_003305_020 Hb_002477_010--Hb_032920_070 Hb_009680_020 Hb_009680_020 Hb_002477_010--Hb_009680_020 Hb_000012_110 Hb_000012_110 Hb_004007_110--Hb_000012_110 Hb_007590_090 Hb_007590_090 Hb_004007_110--Hb_007590_090 Hb_004007_110--Hb_002110_100 Hb_004158_020 Hb_004158_020 Hb_004007_110--Hb_004158_020 Hb_028049_010 Hb_028049_010 Hb_004007_110--Hb_028049_010 Hb_012305_130 Hb_012305_130 Hb_004007_110--Hb_012305_130 Hb_000210_060 Hb_000210_060 Hb_015057_020--Hb_000210_060 Hb_001728_040 Hb_001728_040 Hb_015057_020--Hb_001728_040 Hb_002477_290 Hb_002477_290 Hb_015057_020--Hb_002477_290 Hb_005276_040 Hb_005276_040 Hb_015057_020--Hb_005276_040 Hb_006538_090 Hb_006538_090 Hb_015057_020--Hb_006538_090 Hb_003305_040 Hb_003305_040 Hb_002110_100--Hb_003305_040 Hb_002110_100--Hb_002392_010 Hb_002110_100--Hb_004158_020 Hb_005653_070 Hb_005653_070 Hb_002110_100--Hb_005653_070 Hb_002110_100--Hb_005701_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0172858 0.0775791 0.200703 0.386684 0.0681806 0.0816274
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.197343 0.248377 0.115646 0.174046 0.321676

CAGE analysis