Hb_005276_040

Information

Type transcription factor
Description TF Family: TRAF
Location Contig5276: 36562-44104
Sequence    

Annotation

kegg
ID pop:POPTR_0002s05360g
description POPTRDRAFT_710754; hypothetical protein
nr
ID XP_012092239.1
description PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Jatropha curcas]
swissprot
ID B9DHT4
description ARM REPEAT PROTEIN INTERACTING WITH ABF2 OS=Arabidopsis thaliana GN=ARIA PE=1 SV=2
trembl
ID A0A068U5R7
description Coffea canephora DH200=94 genomic scaffold, scaffold_11 OS=Coffea canephora GN=GSCOC_T00016057001 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47080: 36639-38260 , PASA_asmbl_47081: 38423-40556 , PASA_asmbl_47082: 41174-43787
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005276_040 0.0 transcription factor TF Family: TRAF PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Jatropha curcas]
2 Hb_000174_260 0.0650859371 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent) [Jatropha curcas]
3 Hb_002045_060 0.0746980964 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Jatropha curcas]
4 Hb_015057_020 0.0872707652 - - PREDICTED: E3 SUMO-protein ligase MMS21 [Jatropha curcas]
5 Hb_002392_010 0.0876001064 - - PREDICTED: apurinic endonuclease-redox protein isoform X4 [Jatropha curcas]
6 Hb_000428_060 0.0899764079 - - malate dehydrogenase, putative [Ricinus communis]
7 Hb_001221_030 0.0945761906 - - PREDICTED: adenylate kinase 4 [Jatropha curcas]
8 Hb_002477_290 0.0955536787 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [Jatropha curcas]
9 Hb_001946_390 0.0968734359 - - PREDICTED: NADH-cytochrome b5 reductase-like protein [Jatropha curcas]
10 Hb_000665_140 0.0969183603 - - PREDICTED: protein MEMO1 [Jatropha curcas]
11 Hb_006538_090 0.0990221799 - - PREDICTED: IST1 homolog [Jatropha curcas]
12 Hb_000920_200 0.0999703641 - - PREDICTED: E3 ubiquitin-protein ligase SINAT5-like isoform X1 [Jatropha curcas]
13 Hb_168893_020 0.1023408857 - - PREDICTED: probable protein S-acyltransferase 15 [Jatropha curcas]
14 Hb_000210_060 0.1042793789 transcription factor TF Family: E2F-DP hypothetical protein JCGZ_08780 [Jatropha curcas]
15 Hb_032920_070 0.1066292947 - - PREDICTED: zinc finger protein-like 1 homolog [Jatropha curcas]
16 Hb_007904_230 0.106648234 - - PREDICTED: D-cysteine desulfhydrase 2, mitochondrial [Jatropha curcas]
17 Hb_001892_070 0.1066635139 - - PREDICTED: uncharacterized protein LOC105634071 [Jatropha curcas]
18 Hb_000684_030 0.1077503176 - - syntaxin, putative [Ricinus communis]
19 Hb_000364_050 0.1078476097 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
20 Hb_002110_100 0.1086707676 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_005276_040 Hb_005276_040 Hb_000174_260 Hb_000174_260 Hb_005276_040--Hb_000174_260 Hb_002045_060 Hb_002045_060 Hb_005276_040--Hb_002045_060 Hb_015057_020 Hb_015057_020 Hb_005276_040--Hb_015057_020 Hb_002392_010 Hb_002392_010 Hb_005276_040--Hb_002392_010 Hb_000428_060 Hb_000428_060 Hb_005276_040--Hb_000428_060 Hb_001221_030 Hb_001221_030 Hb_005276_040--Hb_001221_030 Hb_000174_260--Hb_001221_030 Hb_003605_020 Hb_003605_020 Hb_000174_260--Hb_003605_020 Hb_000330_090 Hb_000330_090 Hb_000174_260--Hb_000330_090 Hb_000684_030 Hb_000684_030 Hb_000174_260--Hb_000684_030 Hb_001269_130 Hb_001269_130 Hb_000174_260--Hb_001269_130 Hb_001892_070 Hb_001892_070 Hb_002045_060--Hb_001892_070 Hb_004123_020 Hb_004123_020 Hb_002045_060--Hb_004123_020 Hb_000032_370 Hb_000032_370 Hb_002045_060--Hb_000032_370 Hb_002045_060--Hb_000428_060 Hb_004317_030 Hb_004317_030 Hb_002045_060--Hb_004317_030 Hb_032920_070 Hb_032920_070 Hb_015057_020--Hb_032920_070 Hb_000210_060 Hb_000210_060 Hb_015057_020--Hb_000210_060 Hb_001728_040 Hb_001728_040 Hb_015057_020--Hb_001728_040 Hb_002477_290 Hb_002477_290 Hb_015057_020--Hb_002477_290 Hb_006538_090 Hb_006538_090 Hb_015057_020--Hb_006538_090 Hb_001946_390 Hb_001946_390 Hb_002392_010--Hb_001946_390 Hb_002392_010--Hb_032920_070 Hb_002110_100 Hb_002110_100 Hb_002392_010--Hb_002110_100 Hb_000185_220 Hb_000185_220 Hb_002392_010--Hb_000185_220 Hb_066842_010 Hb_066842_010 Hb_002392_010--Hb_066842_010 Hb_005601_040 Hb_005601_040 Hb_002392_010--Hb_005601_040 Hb_003106_100 Hb_003106_100 Hb_000428_060--Hb_003106_100 Hb_001123_160 Hb_001123_160 Hb_000428_060--Hb_001123_160 Hb_002876_020 Hb_002876_020 Hb_000428_060--Hb_002876_020 Hb_180343_010 Hb_180343_010 Hb_000428_060--Hb_180343_010 Hb_001221_030--Hb_000684_030 Hb_001221_030--Hb_003605_020 Hb_000200_300 Hb_000200_300 Hb_001221_030--Hb_000200_300 Hb_001221_030--Hb_000330_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.554047 0.704268 2.48366 2.42174 0.461839 0.660914
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.95065 2.13351 1.78137 2.42146 2.21375

CAGE analysis