Hb_000210_060

Information

Type transcription factor
Description TF Family: E2F-DP
Location Contig210: 95734-100522
Sequence    

Annotation

kegg
ID rcu:RCOM_0225530
description E2F4,5, putative
nr
ID KDP36136.1
description hypothetical protein JCGZ_08780 [Jatropha curcas]
swissprot
ID Q9FNY0
description Transcription factor E2FA OS=Arabidopsis thaliana GN=E2FA PE=1 SV=1
trembl
ID A0A067KIS9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08780 PE=3 SV=1
Gene Ontology
ID GO:0005634
description transcription factor e2fa-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21729: 95814-96928 , PASA_asmbl_21730: 97306-97695 , PASA_asmbl_21731: 98485-99189
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000210_060 0.0 transcription factor TF Family: E2F-DP hypothetical protein JCGZ_08780 [Jatropha curcas]
2 Hb_015057_020 0.082293825 - - PREDICTED: E3 SUMO-protein ligase MMS21 [Jatropha curcas]
3 Hb_168893_020 0.087489064 - - PREDICTED: probable protein S-acyltransferase 15 [Jatropha curcas]
4 Hb_002477_290 0.0968489294 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [Jatropha curcas]
5 Hb_001898_050 0.1008440437 - - PREDICTED: 60S ribosomal protein L3 [Eucalyptus grandis]
6 Hb_001510_020 0.104013331 - - Diaminopimelate epimerase, putative [Ricinus communis]
7 Hb_005276_040 0.1042793789 transcription factor TF Family: TRAF PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Jatropha curcas]
8 Hb_000187_040 0.1112062496 - - PREDICTED: pyridoxal kinase isoform X5 [Vitis vinifera]
9 Hb_006538_090 0.1121807914 - - PREDICTED: IST1 homolog [Jatropha curcas]
10 Hb_004216_060 0.1124267132 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000684_520 0.1140222482 - - glutathione S-transferase L3-like [Jatropha curcas]
12 Hb_001728_040 0.1149278238 - - Aconitase/3-isopropylmalate dehydratase protein [Theobroma cacao]
13 Hb_000428_060 0.1186922236 - - malate dehydrogenase, putative [Ricinus communis]
14 Hb_003376_180 0.1195552296 - - PREDICTED: E3 ubiquitin-protein ligase MBR1 [Jatropha curcas]
15 Hb_017491_020 0.1199263561 - - hypothetical protein B456_011G056700 [Gossypium raimondii]
16 Hb_004005_020 0.1215423038 - - PREDICTED: nudix hydrolase 20, chloroplastic-like isoform X1 [Jatropha curcas]
17 Hb_032920_070 0.1225536995 - - PREDICTED: zinc finger protein-like 1 homolog [Jatropha curcas]
18 Hb_000077_180 0.1256064211 - - -
19 Hb_000392_550 0.1260501746 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 6, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_000174_260 0.1266725108 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent) [Jatropha curcas]

Gene co-expression network

sample Hb_000210_060 Hb_000210_060 Hb_015057_020 Hb_015057_020 Hb_000210_060--Hb_015057_020 Hb_168893_020 Hb_168893_020 Hb_000210_060--Hb_168893_020 Hb_002477_290 Hb_002477_290 Hb_000210_060--Hb_002477_290 Hb_001898_050 Hb_001898_050 Hb_000210_060--Hb_001898_050 Hb_001510_020 Hb_001510_020 Hb_000210_060--Hb_001510_020 Hb_005276_040 Hb_005276_040 Hb_000210_060--Hb_005276_040 Hb_032920_070 Hb_032920_070 Hb_015057_020--Hb_032920_070 Hb_001728_040 Hb_001728_040 Hb_015057_020--Hb_001728_040 Hb_015057_020--Hb_002477_290 Hb_015057_020--Hb_005276_040 Hb_006538_090 Hb_006538_090 Hb_015057_020--Hb_006538_090 Hb_168893_020--Hb_006538_090 Hb_000555_100 Hb_000555_100 Hb_168893_020--Hb_000555_100 Hb_001369_250 Hb_001369_250 Hb_168893_020--Hb_001369_250 Hb_168893_020--Hb_002477_290 Hb_168893_020--Hb_005276_040 Hb_004880_150 Hb_004880_150 Hb_002477_290--Hb_004880_150 Hb_000841_050 Hb_000841_050 Hb_002477_290--Hb_000841_050 Hb_002660_170 Hb_002660_170 Hb_002477_290--Hb_002660_170 Hb_007218_120 Hb_007218_120 Hb_002477_290--Hb_007218_120 Hb_000251_030 Hb_000251_030 Hb_002477_290--Hb_000251_030 Hb_006059_010 Hb_006059_010 Hb_002477_290--Hb_006059_010 Hb_000330_090 Hb_000330_090 Hb_001898_050--Hb_000330_090 Hb_000392_550 Hb_000392_550 Hb_001898_050--Hb_000392_550 Hb_001408_060 Hb_001408_060 Hb_001898_050--Hb_001408_060 Hb_007199_020 Hb_007199_020 Hb_001898_050--Hb_007199_020 Hb_007904_230 Hb_007904_230 Hb_001898_050--Hb_007904_230 Hb_000548_070 Hb_000548_070 Hb_001510_020--Hb_000548_070 Hb_001728_140 Hb_001728_140 Hb_001510_020--Hb_001728_140 Hb_001510_020--Hb_002477_290 Hb_000684_520 Hb_000684_520 Hb_001510_020--Hb_000684_520 Hb_001510_020--Hb_000251_030 Hb_000174_260 Hb_000174_260 Hb_005276_040--Hb_000174_260 Hb_002045_060 Hb_002045_060 Hb_005276_040--Hb_002045_060 Hb_002392_010 Hb_002392_010 Hb_005276_040--Hb_002392_010 Hb_000428_060 Hb_000428_060 Hb_005276_040--Hb_000428_060 Hb_001221_030 Hb_001221_030 Hb_005276_040--Hb_001221_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.468305 0.606831 1.54248 1.91573 0.197229 0.462108
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.0108 2.22271 0.847671 2.0714 1.50242

CAGE analysis