Hb_000684_520

Information

Type -
Description -
Location Contig684: 480815-494124
Sequence    

Annotation

kegg
ID rcu:RCOM_0819940
description glutathione-s-transferase omega, putative
nr
ID NP_001295698.1
description glutathione S-transferase L3-like [Jatropha curcas]
swissprot
ID Q9LZ06
description Glutathione S-transferase L3 OS=Arabidopsis thaliana GN=GSTL3 PE=2 SV=1
trembl
ID A0A0D3AHI6
description Uncharacterized protein OS=Brassica oleracea var. oleracea GN=GSTL3 PE=4 SV=1
Gene Ontology
ID GO:0005737
description glutathione s-transferase l3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54046: 487553-488126 , PASA_asmbl_54047: 488678-489065 , PASA_asmbl_54048: 491749-492941
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000684_520 0.0 - - glutathione S-transferase L3-like [Jatropha curcas]
2 Hb_001510_020 0.0999520471 - - Diaminopimelate epimerase, putative [Ricinus communis]
3 Hb_168893_020 0.1040880255 - - PREDICTED: probable protein S-acyltransferase 15 [Jatropha curcas]
4 Hb_010560_050 0.1042687167 - - PREDICTED: acyl-protein thioesterase 1-like [Jatropha curcas]
5 Hb_004429_090 0.1094350195 - - PREDICTED: ras GTPase-activating protein-binding protein 1-like isoform X1 [Jatropha curcas]
6 Hb_000187_040 0.111727376 - - PREDICTED: pyridoxal kinase isoform X5 [Vitis vinifera]
7 Hb_000210_060 0.1140222482 transcription factor TF Family: E2F-DP hypothetical protein JCGZ_08780 [Jatropha curcas]
8 Hb_006538_090 0.1170993346 - - PREDICTED: IST1 homolog [Jatropha curcas]
9 Hb_000889_010 0.1177878934 transcription factor TF Family: MYB-related hypothetical protein PRUPE_ppa014728mg [Prunus persica]
10 Hb_000110_050 0.1188003191 - - -
11 Hb_005276_040 0.1203849487 transcription factor TF Family: TRAF PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Jatropha curcas]
12 Hb_001946_310 0.1226562634 - - PREDICTED: probable ethanolamine kinase isoform X2 [Jatropha curcas]
13 Hb_001369_250 0.1226637445 - - PREDICTED: uncharacterized protein LOC105646469 isoform X1 [Jatropha curcas]
14 Hb_015057_020 0.1247970238 - - PREDICTED: E3 SUMO-protein ligase MMS21 [Jatropha curcas]
15 Hb_002477_290 0.129175131 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [Jatropha curcas]
16 Hb_001799_060 0.1312043411 - - Rab6 [Hevea brasiliensis]
17 Hb_000286_060 0.1344674084 - - PREDICTED: uncharacterized protein LOC105633357 [Jatropha curcas]
18 Hb_005648_010 0.13527526 - - PREDICTED: malate dehydrogenase, glyoxysomal isoform X1 [Jatropha curcas]
19 Hb_009898_040 0.1355190949 - - conserved hypothetical protein [Ricinus communis]
20 Hb_100147_010 0.1364810995 - - PREDICTED: exosome complex component MTR3 [Jatropha curcas]

Gene co-expression network

sample Hb_000684_520 Hb_000684_520 Hb_001510_020 Hb_001510_020 Hb_000684_520--Hb_001510_020 Hb_168893_020 Hb_168893_020 Hb_000684_520--Hb_168893_020 Hb_010560_050 Hb_010560_050 Hb_000684_520--Hb_010560_050 Hb_004429_090 Hb_004429_090 Hb_000684_520--Hb_004429_090 Hb_000187_040 Hb_000187_040 Hb_000684_520--Hb_000187_040 Hb_000210_060 Hb_000210_060 Hb_000684_520--Hb_000210_060 Hb_000548_070 Hb_000548_070 Hb_001510_020--Hb_000548_070 Hb_001728_140 Hb_001728_140 Hb_001510_020--Hb_001728_140 Hb_002477_290 Hb_002477_290 Hb_001510_020--Hb_002477_290 Hb_001510_020--Hb_000210_060 Hb_000251_030 Hb_000251_030 Hb_001510_020--Hb_000251_030 Hb_006538_090 Hb_006538_090 Hb_168893_020--Hb_006538_090 Hb_168893_020--Hb_000210_060 Hb_000555_100 Hb_000555_100 Hb_168893_020--Hb_000555_100 Hb_001369_250 Hb_001369_250 Hb_168893_020--Hb_001369_250 Hb_168893_020--Hb_002477_290 Hb_005276_040 Hb_005276_040 Hb_168893_020--Hb_005276_040 Hb_002631_010 Hb_002631_010 Hb_010560_050--Hb_002631_010 Hb_000025_190 Hb_000025_190 Hb_010560_050--Hb_000025_190 Hb_000700_040 Hb_000700_040 Hb_010560_050--Hb_000700_040 Hb_003633_050 Hb_003633_050 Hb_010560_050--Hb_003633_050 Hb_001085_240 Hb_001085_240 Hb_010560_050--Hb_001085_240 Hb_000286_060 Hb_000286_060 Hb_010560_050--Hb_000286_060 Hb_001104_230 Hb_001104_230 Hb_004429_090--Hb_001104_230 Hb_004429_090--Hb_010560_050 Hb_004429_090--Hb_001369_250 Hb_001476_060 Hb_001476_060 Hb_004429_090--Hb_001476_060 Hb_001623_060 Hb_001623_060 Hb_004429_090--Hb_001623_060 Hb_000187_040--Hb_168893_020 Hb_000187_040--Hb_000210_060 Hb_000187_040--Hb_005276_040 Hb_000187_040--Hb_010560_050 Hb_000187_040--Hb_001369_250 Hb_015057_020 Hb_015057_020 Hb_000210_060--Hb_015057_020 Hb_000210_060--Hb_002477_290 Hb_001898_050 Hb_001898_050 Hb_000210_060--Hb_001898_050 Hb_000210_060--Hb_005276_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.69768 3.84106 11.025 19.3032 2.08617 2.72953
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.2798 12.7087 7.39045 20.7482 8.87722

CAGE analysis