Hb_000286_060

Information

Type -
Description -
Location Contig286: 42505-44509
Sequence    

Annotation

kegg
ID rcu:RCOM_1318710
description hypothetical protein
nr
ID XP_012071326.1
description PREDICTED: uncharacterized protein LOC105633357 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KRL5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05013 PE=4 SV=1
Gene Ontology
ID GO:0016021
description senescence associated gene 18 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000286_060 0.0 - - PREDICTED: uncharacterized protein LOC105633357 [Jatropha curcas]
2 Hb_010560_050 0.0942643365 - - PREDICTED: acyl-protein thioesterase 1-like [Jatropha curcas]
3 Hb_001085_240 0.1000845231 - - PREDICTED: probable calcium-binding protein CML22 isoform X1 [Jatropha curcas]
4 Hb_001332_040 0.1081764163 - - PREDICTED: transcription initiation factor IIB [Fragaria vesca subsp. vesca]
5 Hb_000227_070 0.1112077004 - - PREDICTED: ATP-dependent (S)-NAD(P)H-hydrate dehydratase isoform X2 [Jatropha curcas]
6 Hb_003633_050 0.1152780653 - - hypothetical protein B456_013G125900 [Gossypium raimondii]
7 Hb_000096_160 0.1156294112 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 2 [Jatropha curcas]
8 Hb_016522_010 0.1156804494 - - PREDICTED: short-chain dehydrogenase/reductase 2b-like [Jatropha curcas]
9 Hb_000510_240 0.1157360354 desease resistance Gene Name: PRK ATP binding protein, putative [Ricinus communis]
10 Hb_004429_090 0.1168109588 - - PREDICTED: ras GTPase-activating protein-binding protein 1-like isoform X1 [Jatropha curcas]
11 Hb_000700_040 0.1172425688 - - UDP-Glycosyltransferase superfamily protein isoform 4 [Theobroma cacao]
12 Hb_000031_260 0.1206020703 - - hypothetical protein POPTR_0018s03360g [Populus trichocarpa]
13 Hb_011344_190 0.1241913735 - - PREDICTED: maspardin [Jatropha curcas]
14 Hb_100147_010 0.1254972436 - - PREDICTED: exosome complex component MTR3 [Jatropha curcas]
15 Hb_028487_170 0.1262719072 - - PREDICTED: uncharacterized protein LOC105634088 [Jatropha curcas]
16 Hb_001123_160 0.1275634154 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X2 [Jatropha curcas]
17 Hb_001369_250 0.1278660295 - - PREDICTED: uncharacterized protein LOC105646469 isoform X1 [Jatropha curcas]
18 Hb_000345_250 0.1291467777 - - cullin 1-like protein [Hevea brasiliensis]
19 Hb_000982_080 0.1295392857 desease resistance Gene Name: AAA PREDICTED: 26S proteasome regulatory subunit 4 homolog A [Jatropha curcas]
20 Hb_008232_010 0.1304400098 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000286_060 Hb_000286_060 Hb_010560_050 Hb_010560_050 Hb_000286_060--Hb_010560_050 Hb_001085_240 Hb_001085_240 Hb_000286_060--Hb_001085_240 Hb_001332_040 Hb_001332_040 Hb_000286_060--Hb_001332_040 Hb_000227_070 Hb_000227_070 Hb_000286_060--Hb_000227_070 Hb_003633_050 Hb_003633_050 Hb_000286_060--Hb_003633_050 Hb_000096_160 Hb_000096_160 Hb_000286_060--Hb_000096_160 Hb_002631_010 Hb_002631_010 Hb_010560_050--Hb_002631_010 Hb_000025_190 Hb_000025_190 Hb_010560_050--Hb_000025_190 Hb_000700_040 Hb_000700_040 Hb_010560_050--Hb_000700_040 Hb_010560_050--Hb_003633_050 Hb_010560_050--Hb_001085_240 Hb_001085_240--Hb_003633_050 Hb_001085_240--Hb_000096_160 Hb_000094_210 Hb_000094_210 Hb_001085_240--Hb_000094_210 Hb_000228_110 Hb_000228_110 Hb_001085_240--Hb_000228_110 Hb_002675_140 Hb_002675_140 Hb_001085_240--Hb_002675_140 Hb_005914_170 Hb_005914_170 Hb_001085_240--Hb_005914_170 Hb_003266_100 Hb_003266_100 Hb_001332_040--Hb_003266_100 Hb_016522_010 Hb_016522_010 Hb_001332_040--Hb_016522_010 Hb_000103_270 Hb_000103_270 Hb_001332_040--Hb_000103_270 Hb_000621_020 Hb_000621_020 Hb_001332_040--Hb_000621_020 Hb_004429_090 Hb_004429_090 Hb_001332_040--Hb_004429_090 Hb_000510_240 Hb_000510_240 Hb_000227_070--Hb_000510_240 Hb_000227_070--Hb_016522_010 Hb_010174_150 Hb_010174_150 Hb_000227_070--Hb_010174_150 Hb_000227_070--Hb_001085_240 Hb_000227_070--Hb_000096_160 Hb_179924_010 Hb_179924_010 Hb_000227_070--Hb_179924_010 Hb_003633_050--Hb_000096_160 Hb_003633_050--Hb_005914_170 Hb_011344_190 Hb_011344_190 Hb_003633_050--Hb_011344_190 Hb_003376_250 Hb_003376_250 Hb_003633_050--Hb_003376_250 Hb_019654_030 Hb_019654_030 Hb_003633_050--Hb_019654_030 Hb_000096_160--Hb_005914_170 Hb_000096_160--Hb_000228_110 Hb_001157_110 Hb_001157_110 Hb_000096_160--Hb_001157_110 Hb_000096_160--Hb_000103_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.139159 0.121096 0.244149 0.530927 0.161839 0.161377
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.609845 0.566808 0.479134 0.913432 0.443577

CAGE analysis