Hb_002631_010

Information

Type -
Description -
Location Contig2631: 7525-14737
Sequence    

Annotation

kegg
ID pop:POPTR_0008s00560g
description POPTRDRAFT_719941; Vacuolar ATP synthase catalytic subunit A family protein
nr
ID XP_012087323.1
description PREDICTED: V-type proton ATPase catalytic subunit A [Jatropha curcas]
swissprot
ID P31405
description V-type proton ATPase catalytic subunit A OS=Gossypium hirsutum GN=CVA69.24 PE=2 SV=1
trembl
ID A0A067JM34
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22586 PE=3 SV=1
Gene Ontology
ID GO:0033180
description v-type proton atpase catalytic subunit a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27435: 7626-14687 , PASA_asmbl_27436: 12836-13409
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002631_010 0.0 - - PREDICTED: V-type proton ATPase catalytic subunit A [Jatropha curcas]
2 Hb_008245_010 0.0765201354 - - PREDICTED: protein NEDD1 [Jatropha curcas]
3 Hb_010560_050 0.0794185081 - - PREDICTED: acyl-protein thioesterase 1-like [Jatropha curcas]
4 Hb_000094_210 0.0803250369 - - glucose-6-phosphate isomerase, putative [Ricinus communis]
5 Hb_000700_040 0.0871066492 - - UDP-Glycosyltransferase superfamily protein isoform 4 [Theobroma cacao]
6 Hb_000025_190 0.0920134054 - - 26S proteasome non-atpase regulatory subunit, putative [Ricinus communis]
7 Hb_017131_010 0.0933285751 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
8 Hb_003633_050 0.0934539061 - - hypothetical protein B456_013G125900 [Gossypium raimondii]
9 Hb_001085_240 0.0965145651 - - PREDICTED: probable calcium-binding protein CML22 isoform X1 [Jatropha curcas]
10 Hb_011344_190 0.098216831 - - PREDICTED: maspardin [Jatropha curcas]
11 Hb_000060_050 0.0989885576 - - PREDICTED: uncharacterized protein LOC105649718 [Jatropha curcas]
12 Hb_003305_040 0.1030937098 - - AP47/50p mRNA family protein [Populus trichocarpa]
13 Hb_000136_100 0.1035388907 - - PREDICTED: syntaxin-61 [Jatropha curcas]
14 Hb_000212_450 0.1037535527 - - PREDICTED: basic leucine zipper and W2 domain-containing protein 2 [Jatropha curcas]
15 Hb_002284_230 0.1044109104 - - PREDICTED: uncharacterized protein At5g43822 [Jatropha curcas]
16 Hb_000173_410 0.1050685714 - - PREDICTED: BI1-like protein [Jatropha curcas]
17 Hb_001307_030 0.1055799667 - - PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Jatropha curcas]
18 Hb_000252_100 0.1063156732 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
19 Hb_009193_030 0.1082195994 - - hypothetical protein POPTR_0010s16620g [Populus trichocarpa]
20 Hb_000521_130 0.1087694155 - - PREDICTED: citrate synthase, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_002631_010 Hb_002631_010 Hb_008245_010 Hb_008245_010 Hb_002631_010--Hb_008245_010 Hb_010560_050 Hb_010560_050 Hb_002631_010--Hb_010560_050 Hb_000094_210 Hb_000094_210 Hb_002631_010--Hb_000094_210 Hb_000700_040 Hb_000700_040 Hb_002631_010--Hb_000700_040 Hb_000025_190 Hb_000025_190 Hb_002631_010--Hb_000025_190 Hb_017131_010 Hb_017131_010 Hb_002631_010--Hb_017131_010 Hb_000521_130 Hb_000521_130 Hb_008245_010--Hb_000521_130 Hb_000252_100 Hb_000252_100 Hb_008245_010--Hb_000252_100 Hb_000173_410 Hb_000173_410 Hb_008245_010--Hb_000173_410 Hb_006698_080 Hb_006698_080 Hb_008245_010--Hb_006698_080 Hb_005765_050 Hb_005765_050 Hb_008245_010--Hb_005765_050 Hb_010560_050--Hb_000025_190 Hb_010560_050--Hb_000700_040 Hb_003633_050 Hb_003633_050 Hb_010560_050--Hb_003633_050 Hb_001085_240 Hb_001085_240 Hb_010560_050--Hb_001085_240 Hb_000286_060 Hb_000286_060 Hb_010560_050--Hb_000286_060 Hb_000069_210 Hb_000069_210 Hb_000094_210--Hb_000069_210 Hb_007416_090 Hb_007416_090 Hb_000094_210--Hb_007416_090 Hb_000094_210--Hb_001085_240 Hb_000094_210--Hb_003633_050 Hb_000094_210--Hb_000025_190 Hb_011344_190 Hb_011344_190 Hb_000700_040--Hb_011344_190 Hb_000649_140 Hb_000649_140 Hb_000700_040--Hb_000649_140 Hb_003376_250 Hb_003376_250 Hb_000700_040--Hb_003376_250 Hb_003126_070 Hb_003126_070 Hb_000700_040--Hb_003126_070 Hb_062537_010 Hb_062537_010 Hb_000025_190--Hb_062537_010 Hb_002660_170 Hb_002660_170 Hb_000025_190--Hb_002660_170 Hb_004880_150 Hb_004880_150 Hb_000025_190--Hb_004880_150 Hb_005648_010 Hb_005648_010 Hb_000025_190--Hb_005648_010 Hb_003988_050 Hb_003988_050 Hb_000025_190--Hb_003988_050 Hb_000115_150 Hb_000115_150 Hb_000025_190--Hb_000115_150 Hb_008232_010 Hb_008232_010 Hb_017131_010--Hb_008232_010 Hb_017131_010--Hb_011344_190 Hb_004800_100 Hb_004800_100 Hb_017131_010--Hb_004800_100 Hb_017131_010--Hb_000521_130 Hb_000928_110 Hb_000928_110 Hb_017131_010--Hb_000928_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.7966 15.7514 28.078 81.6702 18.3064 27.4479
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
54.1819 39.818 67.7351 63.2776 42.8893

CAGE analysis