Hb_006698_080

Information

Type -
Description -
Location Contig6698: 57769-66736
Sequence    

Annotation

kegg
ID cic:CICLE_v10015725mg
description hypothetical protein
nr
ID XP_012072060.1
description PREDICTED: tobamovirus multiplication protein 1 isoform X2 [Jatropha curcas]
swissprot
ID Q9FEG2
description Tobamovirus multiplication protein 1 OS=Arabidopsis thaliana GN=TOM1 PE=1 SV=1
trembl
ID A0A067KP73
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04580 PE=4 SV=1
Gene Ontology
ID GO:0005622
description tobamovirus multiplication protein 1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53390: 57132-58920 , PASA_asmbl_53391: 57605-58772 , PASA_asmbl_53393: 66493-66657
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006698_080 0.0 - - PREDICTED: tobamovirus multiplication protein 1 isoform X2 [Jatropha curcas]
2 Hb_034380_020 0.1035378493 - - PREDICTED: phosphoglycerate mutase-like [Jatropha curcas]
3 Hb_001085_240 0.1055931466 - - PREDICTED: probable calcium-binding protein CML22 isoform X1 [Jatropha curcas]
4 Hb_019654_030 0.1079393973 - - maoC-like dehydratase domain-containing family protein [Populus trichocarpa]
5 Hb_001828_150 0.1079841212 - - PREDICTED: cytochrome c1-2, heme protein, mitochondrial [Jatropha curcas]
6 Hb_008245_010 0.1082800714 - - PREDICTED: protein NEDD1 [Jatropha curcas]
7 Hb_002631_010 0.1099172023 - - PREDICTED: V-type proton ATPase catalytic subunit A [Jatropha curcas]
8 Hb_017131_010 0.1110903412 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
9 Hb_000820_090 0.1120680931 - - -
10 Hb_001218_030 0.1127775136 - - PREDICTED: uncharacterized protein LOC105630612 [Jatropha curcas]
11 Hb_001390_130 0.114113203 - - hypothetical protein POPTR_0009s08590g [Populus trichocarpa]
12 Hb_008232_010 0.1141143078 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]
13 Hb_002014_020 0.1159552394 - - PREDICTED: protein Mpv17 isoform X2 [Jatropha curcas]
14 Hb_004159_020 0.1168009193 - - Putative dihydrodipicolinate reductase 2, chloroplastic [Aegilops tauschii]
15 Hb_005054_210 0.1179952057 - - hypothetical protein PRUPE_ppa026456mg [Prunus persica]
16 Hb_003633_050 0.1192760578 - - hypothetical protein B456_013G125900 [Gossypium raimondii]
17 Hb_000538_070 0.1196104783 - - PREDICTED: coatomer subunit delta [Jatropha curcas]
18 Hb_005551_040 0.1205925336 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7 [Jatropha curcas]
19 Hb_002111_040 0.1211199919 - - hypothetical protein JCGZ_16989 [Jatropha curcas]
20 Hb_008841_020 0.1225925973 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631075 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_006698_080 Hb_006698_080 Hb_034380_020 Hb_034380_020 Hb_006698_080--Hb_034380_020 Hb_001085_240 Hb_001085_240 Hb_006698_080--Hb_001085_240 Hb_019654_030 Hb_019654_030 Hb_006698_080--Hb_019654_030 Hb_001828_150 Hb_001828_150 Hb_006698_080--Hb_001828_150 Hb_008245_010 Hb_008245_010 Hb_006698_080--Hb_008245_010 Hb_002631_010 Hb_002631_010 Hb_006698_080--Hb_002631_010 Hb_005551_040 Hb_005551_040 Hb_034380_020--Hb_005551_040 Hb_004889_010 Hb_004889_010 Hb_034380_020--Hb_004889_010 Hb_001489_080 Hb_001489_080 Hb_034380_020--Hb_001489_080 Hb_002014_020 Hb_002014_020 Hb_034380_020--Hb_002014_020 Hb_007416_060 Hb_007416_060 Hb_034380_020--Hb_007416_060 Hb_003697_040 Hb_003697_040 Hb_034380_020--Hb_003697_040 Hb_003633_050 Hb_003633_050 Hb_001085_240--Hb_003633_050 Hb_000096_160 Hb_000096_160 Hb_001085_240--Hb_000096_160 Hb_000094_210 Hb_000094_210 Hb_001085_240--Hb_000094_210 Hb_000228_110 Hb_000228_110 Hb_001085_240--Hb_000228_110 Hb_002675_140 Hb_002675_140 Hb_001085_240--Hb_002675_140 Hb_005914_170 Hb_005914_170 Hb_001085_240--Hb_005914_170 Hb_009193_030 Hb_009193_030 Hb_019654_030--Hb_009193_030 Hb_000363_360 Hb_000363_360 Hb_019654_030--Hb_000363_360 Hb_005306_180 Hb_005306_180 Hb_019654_030--Hb_005306_180 Hb_002284_230 Hb_002284_230 Hb_019654_030--Hb_002284_230 Hb_019654_030--Hb_003633_050 Hb_000291_080 Hb_000291_080 Hb_019654_030--Hb_000291_080 Hb_001218_030 Hb_001218_030 Hb_001828_150--Hb_001218_030 Hb_006573_190 Hb_006573_190 Hb_001828_150--Hb_006573_190 Hb_008841_020 Hb_008841_020 Hb_001828_150--Hb_008841_020 Hb_000853_150 Hb_000853_150 Hb_001828_150--Hb_000853_150 Hb_121729_010 Hb_121729_010 Hb_001828_150--Hb_121729_010 Hb_000381_120 Hb_000381_120 Hb_001828_150--Hb_000381_120 Hb_008245_010--Hb_002631_010 Hb_000521_130 Hb_000521_130 Hb_008245_010--Hb_000521_130 Hb_000252_100 Hb_000252_100 Hb_008245_010--Hb_000252_100 Hb_000173_410 Hb_000173_410 Hb_008245_010--Hb_000173_410 Hb_005765_050 Hb_005765_050 Hb_008245_010--Hb_005765_050 Hb_010560_050 Hb_010560_050 Hb_002631_010--Hb_010560_050 Hb_002631_010--Hb_000094_210 Hb_000700_040 Hb_000700_040 Hb_002631_010--Hb_000700_040 Hb_000025_190 Hb_000025_190 Hb_002631_010--Hb_000025_190 Hb_017131_010 Hb_017131_010 Hb_002631_010--Hb_017131_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.74865 0.916665 5.50082 7.91806 2.64318 5.22529
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.4017 7.33995 9.78481 9.68739 5.47416

CAGE analysis