Hb_005551_040

Information

Type -
Description -
Location Contig5551: 50867-53555
Sequence    

Annotation

kegg
ID rcu:RCOM_0437770
description hypothetical protein
nr
ID XP_012074329.1
description PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7 [Jatropha curcas]
swissprot
ID A7UL74
description Protein CHROMOSOME TRANSMISSION FIDELITY 7 OS=Arabidopsis thaliana GN=CTF7 PE=1 SV=1
trembl
ID A0A067KIR4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08765 PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein chromosome transmission fidelity 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48494: 51057-51767
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005551_040 0.0 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7 [Jatropha curcas]
2 Hb_004889_010 0.0424298855 - - Vacuolar protein sorting-associated protein-like protein [Medicago truncatula]
3 Hb_034380_020 0.0628839447 - - PREDICTED: phosphoglycerate mutase-like [Jatropha curcas]
4 Hb_024650_070 0.0718215601 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 7 homolog A-like [Jatropha curcas]
5 Hb_007676_080 0.0780172813 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14-like [Jatropha curcas]
6 Hb_010361_010 0.0826528513 - - PREDICTED: ras-related protein RABH1b [Jatropha curcas]
7 Hb_002014_020 0.0827591351 - - PREDICTED: protein Mpv17 isoform X2 [Jatropha curcas]
8 Hb_004889_020 0.0873079613 - - PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2-like [Jatropha curcas]
9 Hb_003697_040 0.0882768852 - - hypothetical protein B456_005G209600 [Gossypium raimondii]
10 Hb_002110_200 0.0887563525 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X1 [Jatropha curcas]
11 Hb_007441_040 0.089136904 - - PREDICTED: protein mago nashi homolog [Jatropha curcas]
12 Hb_000329_200 0.0900457241 - - PREDICTED: uncharacterized protein LOC105639316 [Jatropha curcas]
13 Hb_009182_010 0.0915037263 - - PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2-like [Jatropha curcas]
14 Hb_000003_230 0.0916206634 - - PREDICTED: FAD synthetase 2, chloroplastic [Jatropha curcas]
15 Hb_004934_100 0.091653598 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001512_030 0.0925180209 - - PREDICTED: surfeit locus protein 2 [Jatropha curcas]
17 Hb_157022_010 0.0926722122 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
18 Hb_008841_020 0.0930441604 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631075 isoform X1 [Jatropha curcas]
19 Hb_000599_250 0.0931866437 - - hypothetical protein POPTR_0002s03730g [Populus trichocarpa]
20 Hb_000045_310 0.0932795077 - - PREDICTED: probable signal peptidase complex subunit 2 [Jatropha curcas]

Gene co-expression network

sample Hb_005551_040 Hb_005551_040 Hb_004889_010 Hb_004889_010 Hb_005551_040--Hb_004889_010 Hb_034380_020 Hb_034380_020 Hb_005551_040--Hb_034380_020 Hb_024650_070 Hb_024650_070 Hb_005551_040--Hb_024650_070 Hb_007676_080 Hb_007676_080 Hb_005551_040--Hb_007676_080 Hb_010361_010 Hb_010361_010 Hb_005551_040--Hb_010361_010 Hb_002014_020 Hb_002014_020 Hb_005551_040--Hb_002014_020 Hb_003697_040 Hb_003697_040 Hb_004889_010--Hb_003697_040 Hb_009615_070 Hb_009615_070 Hb_004889_010--Hb_009615_070 Hb_003349_090 Hb_003349_090 Hb_004889_010--Hb_003349_090 Hb_004889_010--Hb_034380_020 Hb_089032_030 Hb_089032_030 Hb_004889_010--Hb_089032_030 Hb_001489_080 Hb_001489_080 Hb_034380_020--Hb_001489_080 Hb_034380_020--Hb_002014_020 Hb_007416_060 Hb_007416_060 Hb_034380_020--Hb_007416_060 Hb_034380_020--Hb_003697_040 Hb_000329_200 Hb_000329_200 Hb_024650_070--Hb_000329_200 Hb_000045_310 Hb_000045_310 Hb_024650_070--Hb_000045_310 Hb_024650_070--Hb_010361_010 Hb_000566_120 Hb_000566_120 Hb_024650_070--Hb_000566_120 Hb_028396_010 Hb_028396_010 Hb_024650_070--Hb_028396_010 Hb_000003_230 Hb_000003_230 Hb_007676_080--Hb_000003_230 Hb_003304_020 Hb_003304_020 Hb_007676_080--Hb_003304_020 Hb_002169_040 Hb_002169_040 Hb_007676_080--Hb_002169_040 Hb_000390_300 Hb_000390_300 Hb_007676_080--Hb_000390_300 Hb_008494_100 Hb_008494_100 Hb_007676_080--Hb_008494_100 Hb_006573_190 Hb_006573_190 Hb_007676_080--Hb_006573_190 Hb_010361_010--Hb_000329_200 Hb_010361_010--Hb_000566_120 Hb_000599_250 Hb_000599_250 Hb_010361_010--Hb_000599_250 Hb_004934_100 Hb_004934_100 Hb_010361_010--Hb_004934_100 Hb_010361_010--Hb_000045_310 Hb_000236_040 Hb_000236_040 Hb_002014_020--Hb_000236_040 Hb_031862_100 Hb_031862_100 Hb_002014_020--Hb_031862_100 Hb_002014_020--Hb_004889_010 Hb_001218_030 Hb_001218_030 Hb_002014_020--Hb_001218_030 Hb_001828_150 Hb_001828_150 Hb_002014_020--Hb_001828_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.62176 0.739829 2.37153 2.60336 1.24374 2.92695
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.91436 4.58526 3.64109 2.57891 1.96657

CAGE analysis