Hb_000228_110

Information

Type -
Description -
Location Contig228: 152718-162079
Sequence    

Annotation

kegg
ID pop:POPTR_0004s05250g
description POPTRDRAFT_197767; hypothetical protein
nr
ID CBI30655.3
description unnamed protein product [Vitis vinifera]
swissprot
ID O22951
description Nudix hydrolase 22, chloroplastic OS=Arabidopsis thaliana GN=NUDT22 PE=2 SV=2
trembl
ID F6HM72
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0003g00880 PE=4 SV=1
Gene Ontology
ID GO:0016462
description nudix hydrolase mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000228_110 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_001348_020 0.0717352783 - - PREDICTED: uncharacterized protein LOC105638926 isoform X2 [Jatropha curcas]
3 Hb_000096_160 0.0761773584 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 2 [Jatropha curcas]
4 Hb_019053_030 0.0794104996 - - PREDICTED: sulfite oxidase [Jatropha curcas]
5 Hb_001085_240 0.0859485859 - - PREDICTED: probable calcium-binding protein CML22 isoform X1 [Jatropha curcas]
6 Hb_002889_030 0.0895400336 - - PREDICTED: uncharacterized protein At3g49140 [Jatropha curcas]
7 Hb_003633_050 0.0926310192 - - hypothetical protein B456_013G125900 [Gossypium raimondii]
8 Hb_001157_110 0.0959666891 - - PREDICTED: formate--tetrahydrofolate ligase [Populus euphratica]
9 Hb_000095_080 0.0960739383 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 7 [Jatropha curcas]
10 Hb_016522_010 0.1028295608 - - PREDICTED: short-chain dehydrogenase/reductase 2b-like [Jatropha curcas]
11 Hb_003813_050 0.1055714888 - - PREDICTED: tRNA-specific adenosine deaminase 2-like isoform X1 [Jatropha curcas]
12 Hb_062537_010 0.108245533 - - hypothetical protein JCGZ_13884 [Jatropha curcas]
13 Hb_000504_070 0.1091039435 - - PREDICTED: pescadillo homolog isoform X1 [Jatropha curcas]
14 Hb_007558_100 0.1094699031 - - PREDICTED: uncharacterized protein LOC105649092 isoform X2 [Jatropha curcas]
15 Hb_000094_210 0.1100271754 - - glucose-6-phosphate isomerase, putative [Ricinus communis]
16 Hb_000181_050 0.1105818515 - - PREDICTED: uncharacterized protein LOC105637463 [Jatropha curcas]
17 Hb_007383_020 0.1119016517 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005914_170 0.1121745078 - - PREDICTED: eukaryotic translation initiation factor isoform 4E-2-like [Gossypium raimondii]
19 Hb_001104_230 0.1147859105 - - PREDICTED: fructose-bisphosphate aldolase cytoplasmic isozyme [Jatropha curcas]
20 Hb_004880_150 0.1150072706 - - PREDICTED: uncharacterized protein LOC105632834 [Jatropha curcas]

Gene co-expression network

sample Hb_000228_110 Hb_000228_110 Hb_001348_020 Hb_001348_020 Hb_000228_110--Hb_001348_020 Hb_000096_160 Hb_000096_160 Hb_000228_110--Hb_000096_160 Hb_019053_030 Hb_019053_030 Hb_000228_110--Hb_019053_030 Hb_001085_240 Hb_001085_240 Hb_000228_110--Hb_001085_240 Hb_002889_030 Hb_002889_030 Hb_000228_110--Hb_002889_030 Hb_003633_050 Hb_003633_050 Hb_000228_110--Hb_003633_050 Hb_062537_010 Hb_062537_010 Hb_001348_020--Hb_062537_010 Hb_011628_060 Hb_011628_060 Hb_001348_020--Hb_011628_060 Hb_000111_320 Hb_000111_320 Hb_001348_020--Hb_000111_320 Hb_000392_430 Hb_000392_430 Hb_001348_020--Hb_000392_430 Hb_023001_040 Hb_023001_040 Hb_001348_020--Hb_023001_040 Hb_000096_160--Hb_003633_050 Hb_000096_160--Hb_001085_240 Hb_005914_170 Hb_005914_170 Hb_000096_160--Hb_005914_170 Hb_001157_110 Hb_001157_110 Hb_000096_160--Hb_001157_110 Hb_000103_270 Hb_000103_270 Hb_000096_160--Hb_000103_270 Hb_005147_030 Hb_005147_030 Hb_019053_030--Hb_005147_030 Hb_000031_120 Hb_000031_120 Hb_019053_030--Hb_000031_120 Hb_019053_030--Hb_002889_030 Hb_003747_020 Hb_003747_020 Hb_019053_030--Hb_003747_020 Hb_000181_050 Hb_000181_050 Hb_019053_030--Hb_000181_050 Hb_001085_240--Hb_003633_050 Hb_000094_210 Hb_000094_210 Hb_001085_240--Hb_000094_210 Hb_002675_140 Hb_002675_140 Hb_001085_240--Hb_002675_140 Hb_001085_240--Hb_005914_170 Hb_002889_030--Hb_000181_050 Hb_000504_070 Hb_000504_070 Hb_002889_030--Hb_000504_070 Hb_003813_050 Hb_003813_050 Hb_002889_030--Hb_003813_050 Hb_033501_010 Hb_033501_010 Hb_002889_030--Hb_033501_010 Hb_003633_050--Hb_005914_170 Hb_011344_190 Hb_011344_190 Hb_003633_050--Hb_011344_190 Hb_003376_250 Hb_003376_250 Hb_003633_050--Hb_003376_250 Hb_019654_030 Hb_019654_030 Hb_003633_050--Hb_019654_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.807898 0.499776 0.694207 1.75976 0.703559 1.18985
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.999118 1.40535 1.25433 2.82279 1.09751

CAGE analysis