Hb_003747_020

Information

Type -
Description -
Location Contig3747: 13374-20363
Sequence    

Annotation

kegg
ID rcu:RCOM_1443610
description acetyl-CoA synthetase, putative (EC:6.2.1.1)
nr
ID XP_012067417.1
description PREDICTED: acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal isoform X1 [Jatropha curcas]
swissprot
ID B9DGD6
description Acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal OS=Arabidopsis thaliana GN=ACS PE=1 SV=1
trembl
ID B9RGS6
description Acetyl-CoA synthetase, putative OS=Ricinus communis GN=RCOM_1443610 PE=3 SV=1
Gene Ontology
ID GO:0005829
description acetyl-coenzyme a chloroplastic glyoxysomal isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38202: 13407-20307
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003747_020 0.0 - - PREDICTED: acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal isoform X1 [Jatropha curcas]
2 Hb_003994_150 0.0729827619 - - PREDICTED: pyrophosphate-energized membrane proton pump 2 [Jatropha curcas]
3 Hb_000872_010 0.0928184312 - - PREDICTED: putative ubiquitin-conjugating enzyme E2 38 [Jatropha curcas]
4 Hb_019053_030 0.1010453739 - - PREDICTED: sulfite oxidase [Jatropha curcas]
5 Hb_005147_030 0.1027675123 - - hypothetical protein POPTR_0004s23390g [Populus trichocarpa]
6 Hb_001105_020 0.1037564224 - - expressed protein, putative [Ricinus communis]
7 Hb_002968_080 0.105114552 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 5 [Jatropha curcas]
8 Hb_000656_010 0.1058877139 - - PREDICTED: uncharacterized protein LOC105631354 isoform X1 [Jatropha curcas]
9 Hb_000110_190 0.1069508895 - - hypothetical protein B456_013G081300 [Gossypium raimondii]
10 Hb_025193_040 0.1071575099 - - PREDICTED: uncharacterized protein LOC105647286 [Jatropha curcas]
11 Hb_000203_260 0.1087419775 - - PREDICTED: microtubule-associated protein 70-2-like [Jatropha curcas]
12 Hb_004800_200 0.1087979801 - - -
13 Hb_000189_550 0.1095622763 - - PREDICTED: protein transport protein Sec24-like At4g32640 [Jatropha curcas]
14 Hb_005357_160 0.1095827351 - - PREDICTED: probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3B [Jatropha curcas]
15 Hb_002044_150 0.1102656252 - - PREDICTED: A/G-specific adenine DNA glycosylase isoform X1 [Jatropha curcas]
16 Hb_000366_200 0.1103719342 - - PREDICTED: dol-P-Man:Man(6)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase [Jatropha curcas]
17 Hb_000159_100 0.1105875049 - - PREDICTED: uncharacterized protein At4g19900 isoform X2 [Jatropha curcas]
18 Hb_001440_030 0.1109513926 - - PREDICTED: exocyst complex component SEC8 [Jatropha curcas]
19 Hb_002908_050 0.1114620044 - - hypothetical protein CISIN_1g0022902mg, partial [Citrus sinensis]
20 Hb_002169_050 0.1120883416 - - PREDICTED: inositol 1,3,4-trisphosphate 5/6-kinase 4 [Jatropha curcas]

Gene co-expression network

sample Hb_003747_020 Hb_003747_020 Hb_003994_150 Hb_003994_150 Hb_003747_020--Hb_003994_150 Hb_000872_010 Hb_000872_010 Hb_003747_020--Hb_000872_010 Hb_019053_030 Hb_019053_030 Hb_003747_020--Hb_019053_030 Hb_005147_030 Hb_005147_030 Hb_003747_020--Hb_005147_030 Hb_001105_020 Hb_001105_020 Hb_003747_020--Hb_001105_020 Hb_002968_080 Hb_002968_080 Hb_003747_020--Hb_002968_080 Hb_002044_150 Hb_002044_150 Hb_003994_150--Hb_002044_150 Hb_003994_150--Hb_000872_010 Hb_000069_210 Hb_000069_210 Hb_003994_150--Hb_000069_210 Hb_001876_010 Hb_001876_010 Hb_003994_150--Hb_001876_010 Hb_000072_320 Hb_000072_320 Hb_003994_150--Hb_000072_320 Hb_000110_190 Hb_000110_190 Hb_000872_010--Hb_000110_190 Hb_001440_030 Hb_001440_030 Hb_000872_010--Hb_001440_030 Hb_000592_030 Hb_000592_030 Hb_000872_010--Hb_000592_030 Hb_056691_060 Hb_056691_060 Hb_000872_010--Hb_056691_060 Hb_000053_040 Hb_000053_040 Hb_000872_010--Hb_000053_040 Hb_000872_010--Hb_001876_010 Hb_000228_110 Hb_000228_110 Hb_019053_030--Hb_000228_110 Hb_019053_030--Hb_005147_030 Hb_000031_120 Hb_000031_120 Hb_019053_030--Hb_000031_120 Hb_002889_030 Hb_002889_030 Hb_019053_030--Hb_002889_030 Hb_000181_050 Hb_000181_050 Hb_019053_030--Hb_000181_050 Hb_002471_290 Hb_002471_290 Hb_005147_030--Hb_002471_290 Hb_001473_180 Hb_001473_180 Hb_005147_030--Hb_001473_180 Hb_002600_150 Hb_002600_150 Hb_005147_030--Hb_002600_150 Hb_009079_030 Hb_009079_030 Hb_005147_030--Hb_009079_030 Hb_000329_060 Hb_000329_060 Hb_005147_030--Hb_000329_060 Hb_005147_030--Hb_002044_150 Hb_000614_240 Hb_000614_240 Hb_001105_020--Hb_000614_240 Hb_002026_150 Hb_002026_150 Hb_001105_020--Hb_002026_150 Hb_000261_480 Hb_000261_480 Hb_001105_020--Hb_000261_480 Hb_000011_060 Hb_000011_060 Hb_001105_020--Hb_000011_060 Hb_000189_550 Hb_000189_550 Hb_001105_020--Hb_000189_550 Hb_009296_040 Hb_009296_040 Hb_001105_020--Hb_009296_040 Hb_004668_090 Hb_004668_090 Hb_002968_080--Hb_004668_090 Hb_012733_070 Hb_012733_070 Hb_002968_080--Hb_012733_070 Hb_179306_020 Hb_179306_020 Hb_002968_080--Hb_179306_020 Hb_002968_080--Hb_000110_190 Hb_000138_100 Hb_000138_100 Hb_002968_080--Hb_000138_100 Hb_013726_090 Hb_013726_090 Hb_002968_080--Hb_013726_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.51807 5.14403 11.4175 17.3402 14.7114 16.049
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.9116 9.75471 16.4045 31.829 20.8373

CAGE analysis