Hb_001440_030

Information

Type -
Description -
Location Contig1440: 48449-66001
Sequence    

Annotation

kegg
ID cic:CICLE_v100306171m
description hypothetical protein
nr
ID XP_012078451.1
description PREDICTED: exocyst complex component SEC8 [Jatropha curcas]
swissprot
ID Q93YU5
description Exocyst complex component SEC8 OS=Arabidopsis thaliana GN=SEC8 PE=1 SV=1
trembl
ID V4VBQ0
description Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v100306171mg PE=4 SV=1
Gene Ontology
ID GO:0000145
description exocyst complex component sec8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11643: 64218-64554
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001440_030 0.0 - - PREDICTED: exocyst complex component SEC8 [Jatropha curcas]
2 Hb_000066_170 0.0624034174 - - PREDICTED: phosphatidylinositol-3-phosphatase myotubularin-1 isoform X2 [Jatropha curcas]
3 Hb_000261_480 0.0642534499 - - 26S proteasome regulatory subunit family protein [Populus trichocarpa]
4 Hb_000872_010 0.0665685765 - - PREDICTED: putative ubiquitin-conjugating enzyme E2 38 [Jatropha curcas]
5 Hb_000352_340 0.0666442677 - - PREDICTED: importin-13 [Jatropha curcas]
6 Hb_001876_010 0.068356153 - - PREDICTED: arginyl-tRNA--protein transferase 2-like isoform X1 [Jatropha curcas]
7 Hb_009296_040 0.0702064722 - - hypothetical protein L484_007435 [Morus notabilis]
8 Hb_004048_120 0.0706983385 - - PREDICTED: nuclear pore complex protein NUP160 isoform X3 [Jatropha curcas]
9 Hb_000140_210 0.0713240237 - - sec10, putative [Ricinus communis]
10 Hb_000537_050 0.0722538706 - - AP-2 complex subunit beta-1, putative [Ricinus communis]
11 Hb_011819_020 0.0730574396 - - PREDICTED: uncharacterized protein LOC105643703 isoform X1 [Jatropha curcas]
12 Hb_002908_050 0.0745129144 - - hypothetical protein CISIN_1g0022902mg, partial [Citrus sinensis]
13 Hb_002968_080 0.0752258301 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 5 [Jatropha curcas]
14 Hb_001105_020 0.0756179246 - - expressed protein, putative [Ricinus communis]
15 Hb_000358_050 0.075719257 - - PREDICTED: uncharacterized protein LOC105633378 [Jatropha curcas]
16 Hb_004143_160 0.0764240115 - - SAB, putative [Ricinus communis]
17 Hb_085781_020 0.0780557693 - - PREDICTED: extra-large guanine nucleotide-binding protein 1 [Jatropha curcas]
18 Hb_000592_030 0.0783247028 - - PREDICTED: uncharacterized protein LOC100853969 isoform X1 [Vitis vinifera]
19 Hb_003280_020 0.0785523126 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]
20 Hb_000110_190 0.0804039255 - - hypothetical protein B456_013G081300 [Gossypium raimondii]

Gene co-expression network

sample Hb_001440_030 Hb_001440_030 Hb_000066_170 Hb_000066_170 Hb_001440_030--Hb_000066_170 Hb_000261_480 Hb_000261_480 Hb_001440_030--Hb_000261_480 Hb_000872_010 Hb_000872_010 Hb_001440_030--Hb_000872_010 Hb_000352_340 Hb_000352_340 Hb_001440_030--Hb_000352_340 Hb_001876_010 Hb_001876_010 Hb_001440_030--Hb_001876_010 Hb_009296_040 Hb_009296_040 Hb_001440_030--Hb_009296_040 Hb_000140_210 Hb_000140_210 Hb_000066_170--Hb_000140_210 Hb_085781_020 Hb_085781_020 Hb_000066_170--Hb_085781_020 Hb_000592_030 Hb_000592_030 Hb_000066_170--Hb_000592_030 Hb_000537_050 Hb_000537_050 Hb_000066_170--Hb_000537_050 Hb_000066_170--Hb_009296_040 Hb_004208_050 Hb_004208_050 Hb_000261_480--Hb_004208_050 Hb_011819_020 Hb_011819_020 Hb_000261_480--Hb_011819_020 Hb_004048_120 Hb_004048_120 Hb_000261_480--Hb_004048_120 Hb_002890_130 Hb_002890_130 Hb_000261_480--Hb_002890_130 Hb_003280_020 Hb_003280_020 Hb_000261_480--Hb_003280_020 Hb_001377_350 Hb_001377_350 Hb_000261_480--Hb_001377_350 Hb_000110_190 Hb_000110_190 Hb_000872_010--Hb_000110_190 Hb_000872_010--Hb_000592_030 Hb_056691_060 Hb_056691_060 Hb_000872_010--Hb_056691_060 Hb_000053_040 Hb_000053_040 Hb_000872_010--Hb_000053_040 Hb_000872_010--Hb_001876_010 Hb_002908_050 Hb_002908_050 Hb_000352_340--Hb_002908_050 Hb_000352_340--Hb_001876_010 Hb_000189_550 Hb_000189_550 Hb_000352_340--Hb_000189_550 Hb_000028_390 Hb_000028_390 Hb_000352_340--Hb_000028_390 Hb_000352_340--Hb_000066_170 Hb_000011_060 Hb_000011_060 Hb_001876_010--Hb_000011_060 Hb_001876_010--Hb_002908_050 Hb_001876_010--Hb_000189_550 Hb_000069_210 Hb_000069_210 Hb_001876_010--Hb_000069_210 Hb_001876_010--Hb_000028_390 Hb_000984_170 Hb_000984_170 Hb_001876_010--Hb_000984_170 Hb_009296_040--Hb_000140_210 Hb_011016_050 Hb_011016_050 Hb_009296_040--Hb_011016_050 Hb_010142_020 Hb_010142_020 Hb_009296_040--Hb_010142_020 Hb_009296_040--Hb_000028_390 Hb_009296_040--Hb_000537_050 Hb_000614_240 Hb_000614_240 Hb_009296_040--Hb_000614_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.39892 6.72168 5.17934 8.48537 7.25203 8.58973
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.23081 4.24865 7.90908 12.0545 10.1418

CAGE analysis