Hb_033501_010

Information

Type -
Description -
Location Contig33501: 283-1864
Sequence    

Annotation

kegg
ID pop:POPTR_0011s04510g
description POPTRDRAFT_568274; hypothetical protein
nr
ID KDP20910.1
description hypothetical protein JCGZ_21381 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JLM0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21381 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35107: 1-733
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033501_010 0.0 - - hypothetical protein JCGZ_21381 [Jatropha curcas]
2 Hb_002889_030 0.096106242 - - PREDICTED: uncharacterized protein At3g49140 [Jatropha curcas]
3 Hb_003253_050 0.1061067787 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 3 [Jatropha curcas]
4 Hb_119530_010 0.1067857271 - - -
5 Hb_000181_050 0.1132151166 - - PREDICTED: uncharacterized protein LOC105637463 [Jatropha curcas]
6 Hb_003906_170 0.1135392631 - - alcohol dehydrogenase, putative [Ricinus communis]
7 Hb_002391_270 0.1173616933 - - PREDICTED: serine/threonine-protein kinase EDR1-like [Jatropha curcas]
8 Hb_000504_070 0.117592526 - - PREDICTED: pescadillo homolog isoform X1 [Jatropha curcas]
9 Hb_005081_020 0.1197768785 - - PREDICTED: ninja-family protein mc410 [Jatropha curcas]
10 Hb_000001_190 0.1237954335 - - hypothetical protein CISIN_1g0082522mg, partial [Citrus sinensis]
11 Hb_002307_280 0.124899864 - - Endonuclease/exonuclease/phosphatase family protein isoform 3 [Theobroma cacao]
12 Hb_002400_410 0.1256762663 - - PREDICTED: topless-related protein 1-like [Jatropha curcas]
13 Hb_002391_210 0.1262176545 - - PREDICTED: putative F-box protein At1g65770 [Jatropha curcas]
14 Hb_002686_310 0.1262973055 - - PREDICTED: aquaporin SIP1-1 [Jatropha curcas]
15 Hb_003544_030 0.127656911 - - PREDICTED: citrate synthase, glyoxysomal [Jatropha curcas]
16 Hb_002675_140 0.1300164771 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]
17 Hb_005663_110 0.1301393979 - - PREDICTED: large proline-rich protein BAG6 isoform X2 [Jatropha curcas]
18 Hb_001269_140 0.130264975 - - PREDICTED: nuclear pore complex protein NUP96 [Jatropha curcas]
19 Hb_000692_160 0.1303851185 - - Transportin 1 isoform 1 [Theobroma cacao]
20 Hb_003940_040 0.1308731177 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_033501_010 Hb_033501_010 Hb_002889_030 Hb_002889_030 Hb_033501_010--Hb_002889_030 Hb_003253_050 Hb_003253_050 Hb_033501_010--Hb_003253_050 Hb_119530_010 Hb_119530_010 Hb_033501_010--Hb_119530_010 Hb_000181_050 Hb_000181_050 Hb_033501_010--Hb_000181_050 Hb_003906_170 Hb_003906_170 Hb_033501_010--Hb_003906_170 Hb_002391_270 Hb_002391_270 Hb_033501_010--Hb_002391_270 Hb_002889_030--Hb_000181_050 Hb_000504_070 Hb_000504_070 Hb_002889_030--Hb_000504_070 Hb_000228_110 Hb_000228_110 Hb_002889_030--Hb_000228_110 Hb_003813_050 Hb_003813_050 Hb_002889_030--Hb_003813_050 Hb_019053_030 Hb_019053_030 Hb_002889_030--Hb_019053_030 Hb_119494_010 Hb_119494_010 Hb_003253_050--Hb_119494_010 Hb_002400_410 Hb_002400_410 Hb_003253_050--Hb_002400_410 Hb_002391_210 Hb_002391_210 Hb_003253_050--Hb_002391_210 Hb_003253_050--Hb_119530_010 Hb_003253_050--Hb_002889_030 Hb_119530_010--Hb_002400_410 Hb_000920_300 Hb_000920_300 Hb_119530_010--Hb_000920_300 Hb_007416_120 Hb_007416_120 Hb_119530_010--Hb_007416_120 Hb_007747_080 Hb_007747_080 Hb_119530_010--Hb_007747_080 Hb_119530_010--Hb_000504_070 Hb_001268_410 Hb_001268_410 Hb_119530_010--Hb_001268_410 Hb_000181_050--Hb_003813_050 Hb_001085_240 Hb_001085_240 Hb_000181_050--Hb_001085_240 Hb_000034_070 Hb_000034_070 Hb_000181_050--Hb_000034_070 Hb_000096_160 Hb_000096_160 Hb_000181_050--Hb_000096_160 Hb_002675_140 Hb_002675_140 Hb_000181_050--Hb_002675_140 Hb_000159_120 Hb_000159_120 Hb_003906_170--Hb_000159_120 Hb_000692_160 Hb_000692_160 Hb_003906_170--Hb_000692_160 Hb_005081_020 Hb_005081_020 Hb_003906_170--Hb_005081_020 Hb_083799_010 Hb_083799_010 Hb_003906_170--Hb_083799_010 Hb_000327_250 Hb_000327_250 Hb_003906_170--Hb_000327_250 Hb_075315_010 Hb_075315_010 Hb_003906_170--Hb_075315_010 Hb_000009_240 Hb_000009_240 Hb_002391_270--Hb_000009_240 Hb_000116_410 Hb_000116_410 Hb_002391_270--Hb_000116_410 Hb_000645_090 Hb_000645_090 Hb_002391_270--Hb_000645_090 Hb_028285_010 Hb_028285_010 Hb_002391_270--Hb_028285_010 Hb_000023_280 Hb_000023_280 Hb_002391_270--Hb_000023_280 Hb_010142_030 Hb_010142_030 Hb_002391_270--Hb_010142_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.6997 14.1092 6.40515 21.1858 9.24898 17.0971
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.6779 14.9563 9.59827 32.2369 7.08016

CAGE analysis