Hb_002391_270

Information

Type -
Description -
Location Contig2391: 159796-168475
Sequence    

Annotation

kegg
ID tcc:TCM_000116
description ACT-like protein tyrosine kinase family protein
nr
ID XP_012065330.1
description PREDICTED: serine/threonine-protein kinase EDR1-like [Jatropha curcas]
swissprot
ID Q2MHE4
description Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1
trembl
ID A0A067L5J7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22338 PE=4 SV=1
Gene Ontology
ID GO:0004713
description probable serine threonine-protein kinase drkd

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25062: 159757-168374
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002391_270 0.0 - - PREDICTED: serine/threonine-protein kinase EDR1-like [Jatropha curcas]
2 Hb_000009_240 0.0842212237 - - PREDICTED: E3 ubiquitin-protein ligase RNF185-like isoform X1 [Jatropha curcas]
3 Hb_000116_410 0.0885914186 - - hypothetical protein JCGZ_22416 [Jatropha curcas]
4 Hb_000645_090 0.095188974 - - conserved hypothetical protein [Ricinus communis]
5 Hb_028285_010 0.0965120808 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Jatropha curcas]
6 Hb_000023_280 0.0972656949 - - hypothetical protein POPTR_0006s28210g [Populus trichocarpa]
7 Hb_010142_030 0.0992796513 - - PREDICTED: isoamylase 3, chloroplastic isoform X2 [Jatropha curcas]
8 Hb_000062_070 0.1006005411 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
9 Hb_001377_510 0.1040881888 - - ormdl, putative [Ricinus communis]
10 Hb_003940_040 0.1069636927 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000025_180 0.1088275489 - - hypothetical protein CISIN_1g024241mg [Citrus sinensis]
12 Hb_000907_110 0.1109084163 - - dihydroxyacetone kinase family protein [Populus trichocarpa]
13 Hb_001215_040 0.1110286442 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000181_400 0.1117129319 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 25 isoform X2 [Jatropha curcas]
15 Hb_014834_050 0.1122620495 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000200_120 0.1130343511 - - PREDICTED: probable fructose-bisphosphate aldolase 3, chloroplastic [Jatropha curcas]
17 Hb_000191_150 0.1149540228 - - PREDICTED: uncharacterized protein LOC105637951 [Jatropha curcas]
18 Hb_023732_030 0.1160044714 - - PREDICTED: proteinaceous RNase P 2-like isoform X2 [Jatropha curcas]
19 Hb_000120_060 0.1170224273 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP20-1 [Populus euphratica]
20 Hb_033501_010 0.1173616933 - - hypothetical protein JCGZ_21381 [Jatropha curcas]

Gene co-expression network

sample Hb_002391_270 Hb_002391_270 Hb_000009_240 Hb_000009_240 Hb_002391_270--Hb_000009_240 Hb_000116_410 Hb_000116_410 Hb_002391_270--Hb_000116_410 Hb_000645_090 Hb_000645_090 Hb_002391_270--Hb_000645_090 Hb_028285_010 Hb_028285_010 Hb_002391_270--Hb_028285_010 Hb_000023_280 Hb_000023_280 Hb_002391_270--Hb_000023_280 Hb_010142_030 Hb_010142_030 Hb_002391_270--Hb_010142_030 Hb_000318_290 Hb_000318_290 Hb_000009_240--Hb_000318_290 Hb_005914_080 Hb_005914_080 Hb_000009_240--Hb_005914_080 Hb_004767_100 Hb_004767_100 Hb_000009_240--Hb_004767_100 Hb_003777_310 Hb_003777_310 Hb_000009_240--Hb_003777_310 Hb_003940_040 Hb_003940_040 Hb_000009_240--Hb_003940_040 Hb_001635_090 Hb_001635_090 Hb_000116_410--Hb_001635_090 Hb_000116_410--Hb_010142_030 Hb_000191_150 Hb_000191_150 Hb_000116_410--Hb_000191_150 Hb_004143_040 Hb_004143_040 Hb_000116_410--Hb_004143_040 Hb_001178_070 Hb_001178_070 Hb_000116_410--Hb_001178_070 Hb_000116_410--Hb_028285_010 Hb_002481_080 Hb_002481_080 Hb_000645_090--Hb_002481_080 Hb_001377_510 Hb_001377_510 Hb_000645_090--Hb_001377_510 Hb_155159_020 Hb_155159_020 Hb_000645_090--Hb_155159_020 Hb_022115_020 Hb_022115_020 Hb_000645_090--Hb_022115_020 Hb_000477_060 Hb_000477_060 Hb_000645_090--Hb_000477_060 Hb_005188_080 Hb_005188_080 Hb_000645_090--Hb_005188_080 Hb_000062_070 Hb_000062_070 Hb_028285_010--Hb_000062_070 Hb_005048_130 Hb_005048_130 Hb_028285_010--Hb_005048_130 Hb_000907_110 Hb_000907_110 Hb_028285_010--Hb_000907_110 Hb_003761_010 Hb_003761_010 Hb_028285_010--Hb_003761_010 Hb_001408_040 Hb_001408_040 Hb_028285_010--Hb_001408_040 Hb_014497_050 Hb_014497_050 Hb_028285_010--Hb_014497_050 Hb_000023_280--Hb_010142_030 Hb_000023_280--Hb_003761_010 Hb_000023_280--Hb_004143_040 Hb_000023_280--Hb_000645_090 Hb_001215_040 Hb_001215_040 Hb_000023_280--Hb_001215_040 Hb_000023_280--Hb_000116_410 Hb_003693_070 Hb_003693_070 Hb_010142_030--Hb_003693_070 Hb_000120_060 Hb_000120_060 Hb_010142_030--Hb_000120_060 Hb_010142_030--Hb_003940_040 Hb_010142_030--Hb_001635_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.50232 6.73641 3.00542 10.3805 7.78251 7.89936
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.80743 8.17323 6.40996 10.0849 2.50976

CAGE analysis