Hb_003253_050

Information

Type -
Description -
Location Contig3253: 44564-47689
Sequence    

Annotation

kegg
ID rcu:RCOM_1258580
description IAA-amino acid hydrolase ILR1 precursor, putative (EC:3.5.1.32)
nr
ID XP_012074382.1
description PREDICTED: IAA-amino acid hydrolase ILR1-like 3 [Jatropha curcas]
swissprot
ID Q8H3C9
description IAA-amino acid hydrolase ILR1-like 7 OS=Oryza sativa subsp. japonica GN=ILL7 PE=2 SV=1
trembl
ID A0A067KMF5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08817 PE=4 SV=1
Gene Ontology
ID GO:0047980
description iaa-amino acid hydrolase ilr1-like 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34280: 44573-47599
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003253_050 0.0 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 3 [Jatropha curcas]
2 Hb_119494_010 0.0917661363 - - PREDICTED: box C/D snoRNA protein 1 [Jatropha curcas]
3 Hb_002400_410 0.0951076555 - - PREDICTED: topless-related protein 1-like [Jatropha curcas]
4 Hb_002391_210 0.1059325688 - - PREDICTED: putative F-box protein At1g65770 [Jatropha curcas]
5 Hb_033501_010 0.1061067787 - - hypothetical protein JCGZ_21381 [Jatropha curcas]
6 Hb_119530_010 0.1114312794 - - -
7 Hb_002889_030 0.1178706397 - - PREDICTED: uncharacterized protein At3g49140 [Jatropha curcas]
8 Hb_011716_070 0.1219982116 transcription factor TF Family: HRT PREDICTED: uncharacterized protein LOC105637858 isoform X1 [Jatropha curcas]
9 Hb_000181_050 0.1245494925 - - PREDICTED: uncharacterized protein LOC105637463 [Jatropha curcas]
10 Hb_002675_140 0.1262450206 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]
11 Hb_062007_010 0.1267608142 - - PREDICTED: argininosuccinate lyase, chloroplastic [Jatropha curcas]
12 Hb_005081_020 0.1282107214 - - PREDICTED: ninja-family protein mc410 [Jatropha curcas]
13 Hb_002344_060 0.1289989842 - - PREDICTED: methylthioribose-1-phosphate isomerase [Jatropha curcas]
14 Hb_015175_050 0.1293370938 - - PREDICTED: AT-hook motif nuclear-localized protein 10 isoform X3 [Jatropha curcas]
15 Hb_000441_150 0.1301837108 - - PREDICTED: ferredoxin--NADP reductase, root-type isozyme, chloroplastic isoform X2 [Jatropha curcas]
16 Hb_003906_170 0.1304929635 - - alcohol dehydrogenase, putative [Ricinus communis]
17 Hb_000721_040 0.1346810864 - - PREDICTED: uncharacterized protein LOC105636110 isoform X1 [Jatropha curcas]
18 Hb_000152_660 0.1361144623 - - PREDICTED: BAG family molecular chaperone regulator 7 [Jatropha curcas]
19 Hb_000347_440 0.1370766831 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 1 protein [Jatropha curcas]
20 Hb_001268_410 0.1380961928 transcription factor TF Family: TCP PREDICTED: transcription factor TCP20 [Jatropha curcas]

Gene co-expression network

sample Hb_003253_050 Hb_003253_050 Hb_119494_010 Hb_119494_010 Hb_003253_050--Hb_119494_010 Hb_002400_410 Hb_002400_410 Hb_003253_050--Hb_002400_410 Hb_002391_210 Hb_002391_210 Hb_003253_050--Hb_002391_210 Hb_033501_010 Hb_033501_010 Hb_003253_050--Hb_033501_010 Hb_119530_010 Hb_119530_010 Hb_003253_050--Hb_119530_010 Hb_002889_030 Hb_002889_030 Hb_003253_050--Hb_002889_030 Hb_002005_100 Hb_002005_100 Hb_119494_010--Hb_002005_100 Hb_119494_010--Hb_002400_410 Hb_008147_070 Hb_008147_070 Hb_119494_010--Hb_008147_070 Hb_014894_010 Hb_014894_010 Hb_119494_010--Hb_014894_010 Hb_001214_090 Hb_001214_090 Hb_119494_010--Hb_001214_090 Hb_003294_070 Hb_003294_070 Hb_002400_410--Hb_003294_070 Hb_007416_120 Hb_007416_120 Hb_002400_410--Hb_007416_120 Hb_002471_290 Hb_002471_290 Hb_002400_410--Hb_002471_290 Hb_002400_410--Hb_119530_010 Hb_009079_030 Hb_009079_030 Hb_002400_410--Hb_009079_030 Hb_000181_400 Hb_000181_400 Hb_002400_410--Hb_000181_400 Hb_172632_110 Hb_172632_110 Hb_002391_210--Hb_172632_110 Hb_002391_210--Hb_002400_410 Hb_001761_130 Hb_001761_130 Hb_002391_210--Hb_001761_130 Hb_007747_080 Hb_007747_080 Hb_002391_210--Hb_007747_080 Hb_001021_080 Hb_001021_080 Hb_002391_210--Hb_001021_080 Hb_005081_020 Hb_005081_020 Hb_002391_210--Hb_005081_020 Hb_033501_010--Hb_002889_030 Hb_033501_010--Hb_119530_010 Hb_000181_050 Hb_000181_050 Hb_033501_010--Hb_000181_050 Hb_003906_170 Hb_003906_170 Hb_033501_010--Hb_003906_170 Hb_002391_270 Hb_002391_270 Hb_033501_010--Hb_002391_270 Hb_000920_300 Hb_000920_300 Hb_119530_010--Hb_000920_300 Hb_119530_010--Hb_007416_120 Hb_119530_010--Hb_007747_080 Hb_000504_070 Hb_000504_070 Hb_119530_010--Hb_000504_070 Hb_001268_410 Hb_001268_410 Hb_119530_010--Hb_001268_410 Hb_002889_030--Hb_000181_050 Hb_002889_030--Hb_000504_070 Hb_000228_110 Hb_000228_110 Hb_002889_030--Hb_000228_110 Hb_003813_050 Hb_003813_050 Hb_002889_030--Hb_003813_050 Hb_019053_030 Hb_019053_030 Hb_002889_030--Hb_019053_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.03021 8.94678 3.2231 10.4558 4.71836 9.96609
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.1771 6.9058 6.65091 23.9748 5.96505

CAGE analysis