Hb_002005_100

Information

Type -
Description -
Location Contig2005: 94850-98829
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20313: 94708-95105 , PASA_asmbl_20314: 95136-95260 , PASA_asmbl_20315: 97047-97402
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002005_100 0.0 - - -
2 Hb_119494_010 0.0926497892 - - PREDICTED: box C/D snoRNA protein 1 [Jatropha curcas]
3 Hb_000190_090 0.105983733 - - PREDICTED: uncharacterized protein LOC105649930 [Jatropha curcas]
4 Hb_019053_030 0.1092203158 - - PREDICTED: sulfite oxidase [Jatropha curcas]
5 Hb_004411_060 0.1106968358 - - acetolactate synthase, putative [Ricinus communis]
6 Hb_001214_090 0.1151099519 - - PREDICTED: acyl-coenzyme A oxidase 4, peroxisomal [Jatropha curcas]
7 Hb_016522_010 0.1174630155 - - PREDICTED: short-chain dehydrogenase/reductase 2b-like [Jatropha curcas]
8 Hb_004586_350 0.1214353549 - - Phosphoribosylaminoimidazole-succinocarboxamide synthase [Morus notabilis]
9 Hb_014894_010 0.1233078868 - - hypothetical protein CICLE_v10001869mg [Citrus clementina]
10 Hb_004079_080 0.1280098472 - - PREDICTED: ras-related protein RHN1-like [Jatropha curcas]
11 Hb_077562_030 0.1314155303 - - PREDICTED: cytochrome P450 4X1-like isoform X1 [Jatropha curcas]
12 Hb_012022_080 0.1331874042 - - ubiquitin-protein ligase, putative [Ricinus communis]
13 Hb_000106_120 0.1353739761 - - hypothetical protein glysoja_007050 [Glycine soja]
14 Hb_179924_010 0.1356223455 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like [Populus euphratica]
15 Hb_008864_090 0.1356841024 - - PREDICTED: plastid division protein PDV2-like [Jatropha curcas]
16 Hb_042474_010 0.1358193728 - - PREDICTED: adenylyltransferase and sulfurtransferase MOCS3 [Jatropha curcas]
17 Hb_098315_080 0.1361721891 - - methylmalonate-semialdehyde dehydrogenase, putative [Ricinus communis]
18 Hb_002400_410 0.1385690911 - - PREDICTED: topless-related protein 1-like [Jatropha curcas]
19 Hb_000215_360 0.1386424247 - - Uncharacterized protein isoform 2 [Theobroma cacao]
20 Hb_004934_050 0.1396584469 - - Eukaryotic release factor 1-3 isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_002005_100 Hb_002005_100 Hb_119494_010 Hb_119494_010 Hb_002005_100--Hb_119494_010 Hb_000190_090 Hb_000190_090 Hb_002005_100--Hb_000190_090 Hb_019053_030 Hb_019053_030 Hb_002005_100--Hb_019053_030 Hb_004411_060 Hb_004411_060 Hb_002005_100--Hb_004411_060 Hb_001214_090 Hb_001214_090 Hb_002005_100--Hb_001214_090 Hb_016522_010 Hb_016522_010 Hb_002005_100--Hb_016522_010 Hb_003253_050 Hb_003253_050 Hb_119494_010--Hb_003253_050 Hb_002400_410 Hb_002400_410 Hb_119494_010--Hb_002400_410 Hb_008147_070 Hb_008147_070 Hb_119494_010--Hb_008147_070 Hb_014894_010 Hb_014894_010 Hb_119494_010--Hb_014894_010 Hb_119494_010--Hb_001214_090 Hb_012022_080 Hb_012022_080 Hb_000190_090--Hb_012022_080 Hb_042474_010 Hb_042474_010 Hb_000190_090--Hb_042474_010 Hb_004096_110 Hb_004096_110 Hb_000190_090--Hb_004096_110 Hb_011224_160 Hb_011224_160 Hb_000190_090--Hb_011224_160 Hb_021576_010 Hb_021576_010 Hb_000190_090--Hb_021576_010 Hb_016347_010 Hb_016347_010 Hb_000190_090--Hb_016347_010 Hb_000228_110 Hb_000228_110 Hb_019053_030--Hb_000228_110 Hb_005147_030 Hb_005147_030 Hb_019053_030--Hb_005147_030 Hb_000031_120 Hb_000031_120 Hb_019053_030--Hb_000031_120 Hb_002889_030 Hb_002889_030 Hb_019053_030--Hb_002889_030 Hb_003747_020 Hb_003747_020 Hb_019053_030--Hb_003747_020 Hb_000181_050 Hb_000181_050 Hb_019053_030--Hb_000181_050 Hb_098315_080 Hb_098315_080 Hb_004411_060--Hb_098315_080 Hb_164898_010 Hb_164898_010 Hb_004411_060--Hb_164898_010 Hb_006909_010 Hb_006909_010 Hb_004411_060--Hb_006909_010 Hb_025193_040 Hb_025193_040 Hb_004411_060--Hb_025193_040 Hb_004411_060--Hb_003747_020 Hb_001623_160 Hb_001623_160 Hb_001214_090--Hb_001623_160 Hb_001214_090--Hb_016522_010 Hb_010863_010 Hb_010863_010 Hb_001214_090--Hb_010863_010 Hb_001214_090--Hb_000190_090 Hb_003266_100 Hb_003266_100 Hb_001214_090--Hb_003266_100 Hb_000227_070 Hb_000227_070 Hb_016522_010--Hb_000227_070 Hb_001414_030 Hb_001414_030 Hb_016522_010--Hb_001414_030 Hb_000510_240 Hb_000510_240 Hb_016522_010--Hb_000510_240 Hb_016522_010--Hb_000228_110 Hb_000210_120 Hb_000210_120 Hb_016522_010--Hb_000210_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.963756 1.6818 1.04405 1.52329 1.01311 1.89306
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.49338 2.1275 1.80995 6.50887 2.29028

CAGE analysis