Hb_025193_040

Information

Type -
Description -
Location Contig25193: 34855-49044
Sequence    

Annotation

kegg
ID rcu:RCOM_1438660
description hypothetical protein
nr
ID XP_012088693.1
description PREDICTED: uncharacterized protein LOC105647286 [Jatropha curcas]
swissprot
ID Q8LE94
description E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana GN=At3g02290 PE=2 SV=1
trembl
ID A0A067JKD2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23081 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26318: 35198-40769 , PASA_asmbl_26319: 42296-46297
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025193_040 0.0 - - PREDICTED: uncharacterized protein LOC105647286 [Jatropha curcas]
2 Hb_002025_330 0.071550315 - - peptide transporter, putative [Ricinus communis]
3 Hb_004143_160 0.0783259102 - - SAB, putative [Ricinus communis]
4 Hb_001963_100 0.0829019022 transcription factor TF Family: bZIP PREDICTED: bZIP transcription factor 17-like [Jatropha curcas]
5 Hb_001440_030 0.0835042037 - - PREDICTED: exocyst complex component SEC8 [Jatropha curcas]
6 Hb_000922_030 0.0868372621 - - PREDICTED: protein EXECUTER 2, chloroplastic [Jatropha curcas]
7 Hb_000872_010 0.0889798418 - - PREDICTED: putative ubiquitin-conjugating enzyme E2 38 [Jatropha curcas]
8 Hb_004048_120 0.0892318991 - - PREDICTED: nuclear pore complex protein NUP160 isoform X3 [Jatropha curcas]
9 Hb_000922_380 0.0910505149 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein MPP10 isoform X1 [Jatropha curcas]
10 Hb_000261_480 0.0939147242 - - 26S proteasome regulatory subunit family protein [Populus trichocarpa]
11 Hb_000159_100 0.0969042143 - - PREDICTED: uncharacterized protein At4g19900 isoform X2 [Jatropha curcas]
12 Hb_000976_100 0.0976042765 - - eukaryotic translation elongation factor, putative [Ricinus communis]
13 Hb_000358_050 0.0977983011 - - PREDICTED: uncharacterized protein LOC105633378 [Jatropha curcas]
14 Hb_003280_020 0.097903538 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]
15 Hb_002908_050 0.1006097426 - - hypothetical protein CISIN_1g0022902mg, partial [Citrus sinensis]
16 Hb_001105_020 0.1028132424 - - expressed protein, putative [Ricinus communis]
17 Hb_000106_120 0.1029129852 - - hypothetical protein glysoja_007050 [Glycine soja]
18 Hb_004800_200 0.1030873413 - - -
19 Hb_000352_340 0.1038392533 - - PREDICTED: importin-13 [Jatropha curcas]
20 Hb_006909_010 0.1039468773 - - 5-oxoprolinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_025193_040 Hb_025193_040 Hb_002025_330 Hb_002025_330 Hb_025193_040--Hb_002025_330 Hb_004143_160 Hb_004143_160 Hb_025193_040--Hb_004143_160 Hb_001963_100 Hb_001963_100 Hb_025193_040--Hb_001963_100 Hb_001440_030 Hb_001440_030 Hb_025193_040--Hb_001440_030 Hb_000922_030 Hb_000922_030 Hb_025193_040--Hb_000922_030 Hb_000872_010 Hb_000872_010 Hb_025193_040--Hb_000872_010 Hb_003280_020 Hb_003280_020 Hb_002025_330--Hb_003280_020 Hb_004048_120 Hb_004048_120 Hb_002025_330--Hb_004048_120 Hb_002025_330--Hb_004143_160 Hb_002025_330--Hb_000922_030 Hb_000358_050 Hb_000358_050 Hb_002025_330--Hb_000358_050 Hb_055062_040 Hb_055062_040 Hb_002025_330--Hb_055062_040 Hb_004143_160--Hb_004048_120 Hb_004143_160--Hb_000358_050 Hb_007994_010 Hb_007994_010 Hb_004143_160--Hb_007994_010 Hb_135572_010 Hb_135572_010 Hb_004143_160--Hb_135572_010 Hb_002639_080 Hb_002639_080 Hb_004143_160--Hb_002639_080 Hb_000215_140 Hb_000215_140 Hb_001963_100--Hb_000215_140 Hb_000230_260 Hb_000230_260 Hb_001963_100--Hb_000230_260 Hb_000412_010 Hb_000412_010 Hb_001963_100--Hb_000412_010 Hb_007632_010 Hb_007632_010 Hb_001963_100--Hb_007632_010 Hb_000667_030 Hb_000667_030 Hb_001963_100--Hb_000667_030 Hb_000066_170 Hb_000066_170 Hb_001440_030--Hb_000066_170 Hb_000261_480 Hb_000261_480 Hb_001440_030--Hb_000261_480 Hb_001440_030--Hb_000872_010 Hb_000352_340 Hb_000352_340 Hb_001440_030--Hb_000352_340 Hb_001876_010 Hb_001876_010 Hb_001440_030--Hb_001876_010 Hb_009296_040 Hb_009296_040 Hb_001440_030--Hb_009296_040 Hb_000922_030--Hb_000358_050 Hb_000922_030--Hb_135572_010 Hb_000922_030--Hb_004143_160 Hb_000365_240 Hb_000365_240 Hb_000922_030--Hb_000365_240 Hb_007472_090 Hb_007472_090 Hb_000922_030--Hb_007472_090 Hb_000110_190 Hb_000110_190 Hb_000872_010--Hb_000110_190 Hb_000592_030 Hb_000592_030 Hb_000872_010--Hb_000592_030 Hb_056691_060 Hb_056691_060 Hb_000872_010--Hb_056691_060 Hb_000053_040 Hb_000053_040 Hb_000872_010--Hb_000053_040 Hb_000872_010--Hb_001876_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.64673 5.81711 4.13538 8.27702 9.67723 7.50881
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.44199 4.06271 7.51021 15.1482 13.7906

CAGE analysis