Hb_001623_160

Information

Type -
Description -
Location Contig1623: 86955-93865
Sequence    

Annotation

kegg
ID rcu:RCOM_1023140
description BRASSINOSTEROID INSENSITIVE 1 precursor, putative (EC:2.7.11.25 1.3.1.74)
nr
ID XP_012077675.1
description PREDICTED: probable leucine-rich repeat receptor-like protein kinase At2g33170 [Jatropha curcas]
swissprot
ID O49318
description Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1
trembl
ID A0A067KAY3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12930 PE=4 SV=1
Gene Ontology
ID GO:0005622
description probable leucine-rich repeat receptor-like protein kinase at2g33170

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14689: 87233-89518
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001623_160 0.0 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At2g33170 [Jatropha curcas]
2 Hb_001214_090 0.0943478042 - - PREDICTED: acyl-coenzyme A oxidase 4, peroxisomal [Jatropha curcas]
3 Hb_000381_110 0.1144150396 - - PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like isoform X2 [Jatropha curcas]
4 Hb_003038_140 0.1144751499 - - soluble inorganic pyrophosphatase [Hevea brasiliensis]
5 Hb_001971_060 0.1162753016 - - PREDICTED: 66 kDa stress protein-like [Populus euphratica]
6 Hb_004079_080 0.1194563743 - - PREDICTED: ras-related protein RHN1-like [Jatropha curcas]
7 Hb_001332_040 0.1194990671 - - PREDICTED: transcription initiation factor IIB [Fragaria vesca subsp. vesca]
8 Hb_100147_010 0.1244519263 - - PREDICTED: exosome complex component MTR3 [Jatropha curcas]
9 Hb_009193_100 0.1249123605 - - hypothetical protein JCGZ_15709 [Jatropha curcas]
10 Hb_004064_010 0.1266765305 - - PREDICTED: uncharacterized protein LOC105133340 isoform X1 [Populus euphratica]
11 Hb_003266_100 0.1270257652 - - Isomerase protein [Gossypium arboreum]
12 Hb_028811_010 0.1301220849 - - PREDICTED: uncharacterized protein LOC105650178 isoform X1 [Jatropha curcas]
13 Hb_016522_010 0.1307415334 - - PREDICTED: short-chain dehydrogenase/reductase 2b-like [Jatropha curcas]
14 Hb_000621_020 0.1322788896 - - PREDICTED: mannose-6-phosphate isomerase 1 [Jatropha curcas]
15 Hb_001486_030 0.1345994378 - - conserved hypothetical protein [Ricinus communis]
16 Hb_007441_280 0.1357706945 - - hypothetical protein JCGZ_14672 [Jatropha curcas]
17 Hb_012760_040 0.137993609 - - PREDICTED: aconitate hydratase 1 [Jatropha curcas]
18 Hb_001726_110 0.1417907669 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 19 [Jatropha curcas]
19 Hb_001341_100 0.1420993593 - - hypothetical protein JCGZ_05568 [Jatropha curcas]
20 Hb_109002_020 0.1422059693 - - PREDICTED: CTP synthase-like [Jatropha curcas]

Gene co-expression network

sample Hb_001623_160 Hb_001623_160 Hb_001214_090 Hb_001214_090 Hb_001623_160--Hb_001214_090 Hb_000381_110 Hb_000381_110 Hb_001623_160--Hb_000381_110 Hb_003038_140 Hb_003038_140 Hb_001623_160--Hb_003038_140 Hb_001971_060 Hb_001971_060 Hb_001623_160--Hb_001971_060 Hb_004079_080 Hb_004079_080 Hb_001623_160--Hb_004079_080 Hb_001332_040 Hb_001332_040 Hb_001623_160--Hb_001332_040 Hb_016522_010 Hb_016522_010 Hb_001214_090--Hb_016522_010 Hb_010863_010 Hb_010863_010 Hb_001214_090--Hb_010863_010 Hb_000190_090 Hb_000190_090 Hb_001214_090--Hb_000190_090 Hb_119494_010 Hb_119494_010 Hb_001214_090--Hb_119494_010 Hb_003266_100 Hb_003266_100 Hb_001214_090--Hb_003266_100 Hb_000381_110--Hb_001971_060 Hb_100147_010 Hb_100147_010 Hb_000381_110--Hb_100147_010 Hb_000025_190 Hb_000025_190 Hb_000381_110--Hb_000025_190 Hb_000251_030 Hb_000251_030 Hb_000381_110--Hb_000251_030 Hb_001221_020 Hb_001221_020 Hb_000381_110--Hb_001221_020 Hb_002631_010 Hb_002631_010 Hb_000381_110--Hb_002631_010 Hb_001369_250 Hb_001369_250 Hb_003038_140--Hb_001369_250 Hb_001726_110 Hb_001726_110 Hb_003038_140--Hb_001726_110 Hb_003038_140--Hb_001332_040 Hb_002675_140 Hb_002675_140 Hb_003038_140--Hb_002675_140 Hb_010174_150 Hb_010174_150 Hb_003038_140--Hb_010174_150 Hb_001971_060--Hb_100147_010 Hb_029385_010 Hb_029385_010 Hb_001971_060--Hb_029385_010 Hb_001971_060--Hb_004079_080 Hb_001728_140 Hb_001728_140 Hb_001971_060--Hb_001728_140 Hb_000621_020 Hb_000621_020 Hb_004079_080--Hb_000621_020 Hb_004079_080--Hb_001214_090 Hb_004079_080--Hb_016522_010 Hb_004079_080--Hb_100147_010 Hb_000286_060 Hb_000286_060 Hb_001332_040--Hb_000286_060 Hb_001332_040--Hb_003266_100 Hb_001332_040--Hb_016522_010 Hb_000103_270 Hb_000103_270 Hb_001332_040--Hb_000103_270 Hb_001332_040--Hb_000621_020 Hb_004429_090 Hb_004429_090 Hb_001332_040--Hb_004429_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.02087 1.71829 1.16717 2.70611 0.336164 0.937126
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.86271 1.90567 2.69168 5.59214 1.18742

CAGE analysis