Hb_001726_110

Information

Type transcription factor
Description TF Family: Orphans
Location Contig1726: 167830-171770
Sequence    

Annotation

kegg
ID rcu:RCOM_1450450
description Salt-tolerance protein, putative
nr
ID XP_012084443.1
description PREDICTED: B-box zinc finger protein 19 [Jatropha curcas]
swissprot
ID C0SVM5
description B-box zinc finger protein 19 OS=Arabidopsis thaliana GN=BBX19 PE=2 SV=1
trembl
ID A0A067JUK0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19646 PE=4 SV=1
Gene Ontology
ID GO:0005622
description b-box zinc finger protein 19-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16332: 168439-168724 , PASA_asmbl_16333: 168037-170488 , PASA_asmbl_16334: 167778-171860 , PASA_asmbl_16335: 170702-171033 , PASA_asmbl_16336: 168768-171860 , PASA_asmbl_16337: 167778-171860 , PASA_asmbl_16338: 168768-171860
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001726_110 0.0 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 19 [Jatropha curcas]
2 Hb_005489_140 0.1040840954 - - PREDICTED: maspardin [Jatropha curcas]
3 Hb_003038_140 0.1132483491 - - soluble inorganic pyrophosphatase [Hevea brasiliensis]
4 Hb_000144_120 0.1165362327 - - WD-repeat protein, putative [Ricinus communis]
5 Hb_082741_010 0.1169198556 - - PREDICTED: uncharacterized protein LOC105649930 [Jatropha curcas]
6 Hb_001019_050 0.1173245689 - - PREDICTED: importin-13 [Jatropha curcas]
7 Hb_007441_280 0.1189095876 - - hypothetical protein JCGZ_14672 [Jatropha curcas]
8 Hb_006501_160 0.1208340068 - - PREDICTED: hexokinase-1-like [Jatropha curcas]
9 Hb_025336_020 0.1224794208 - - PREDICTED: PP2A regulatory subunit TAP46 [Jatropha curcas]
10 Hb_107298_010 0.123773475 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A isoform X2 [Jatropha curcas]
11 Hb_003906_170 0.1244812586 - - alcohol dehydrogenase, putative [Ricinus communis]
12 Hb_008790_020 0.1288162042 - - PREDICTED: uncharacterized protein LOC105638122 [Jatropha curcas]
13 Hb_000699_230 0.1303134937 - - Ankyrin repeat family protein, putative [Theobroma cacao]
14 Hb_005081_020 0.1308286043 - - PREDICTED: ninja-family protein mc410 [Jatropha curcas]
15 Hb_073171_100 0.132415964 - - PREDICTED: clavaminate synthase-like protein At3g21360 [Jatropha curcas]
16 Hb_083799_010 0.1338346765 - - ubiquitin-protein ligase, putative [Ricinus communis]
17 Hb_000302_200 0.1347130613 - - ornithine cyclodeaminase, putative [Ricinus communis]
18 Hb_000159_120 0.1349782616 - - PREDICTED: uncharacterized protein LOC105632857 [Jatropha curcas]
19 Hb_011287_010 0.1350098641 - - ubiquitin-protein ligase, putative [Ricinus communis]
20 Hb_000395_220 0.1360506377 - - PREDICTED: LOW QUALITY PROTEIN: ultraviolet-B receptor UVR8 [Jatropha curcas]

Gene co-expression network

sample Hb_001726_110 Hb_001726_110 Hb_005489_140 Hb_005489_140 Hb_001726_110--Hb_005489_140 Hb_003038_140 Hb_003038_140 Hb_001726_110--Hb_003038_140 Hb_000144_120 Hb_000144_120 Hb_001726_110--Hb_000144_120 Hb_082741_010 Hb_082741_010 Hb_001726_110--Hb_082741_010 Hb_001019_050 Hb_001019_050 Hb_001726_110--Hb_001019_050 Hb_007441_280 Hb_007441_280 Hb_001726_110--Hb_007441_280 Hb_107298_010 Hb_107298_010 Hb_005489_140--Hb_107298_010 Hb_025336_020 Hb_025336_020 Hb_005489_140--Hb_025336_020 Hb_089140_040 Hb_089140_040 Hb_005489_140--Hb_089140_040 Hb_005489_140--Hb_001019_050 Hb_083799_010 Hb_083799_010 Hb_005489_140--Hb_083799_010 Hb_008790_020 Hb_008790_020 Hb_005489_140--Hb_008790_020 Hb_001369_250 Hb_001369_250 Hb_003038_140--Hb_001369_250 Hb_001623_160 Hb_001623_160 Hb_003038_140--Hb_001623_160 Hb_001332_040 Hb_001332_040 Hb_003038_140--Hb_001332_040 Hb_002675_140 Hb_002675_140 Hb_003038_140--Hb_002675_140 Hb_010174_150 Hb_010174_150 Hb_003038_140--Hb_010174_150 Hb_000144_120--Hb_007441_280 Hb_012760_040 Hb_012760_040 Hb_000144_120--Hb_012760_040 Hb_001004_140 Hb_001004_140 Hb_000144_120--Hb_001004_140 Hb_000327_250 Hb_000327_250 Hb_000144_120--Hb_000327_250 Hb_001900_100 Hb_001900_100 Hb_000144_120--Hb_001900_100 Hb_001221_020 Hb_001221_020 Hb_000144_120--Hb_001221_020 Hb_006916_110 Hb_006916_110 Hb_082741_010--Hb_006916_110 Hb_000345_320 Hb_000345_320 Hb_082741_010--Hb_000345_320 Hb_082741_010--Hb_012760_040 Hb_042474_010 Hb_042474_010 Hb_082741_010--Hb_042474_010 Hb_000347_450 Hb_000347_450 Hb_082741_010--Hb_000347_450 Hb_000209_100 Hb_000209_100 Hb_082741_010--Hb_000209_100 Hb_000088_270 Hb_000088_270 Hb_001019_050--Hb_000088_270 Hb_001019_050--Hb_025336_020 Hb_001019_050--Hb_000347_450 Hb_000159_120 Hb_000159_120 Hb_001019_050--Hb_000159_120 Hb_001019_050--Hb_107298_010 Hb_007441_280--Hb_001221_020 Hb_007441_280--Hb_001900_100 Hb_007441_280--Hb_000159_120 Hb_005081_020 Hb_005081_020 Hb_007441_280--Hb_005081_020 Hb_007441_280--Hb_000327_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.00104 25.376 11.6564 22.8582 3.98185 9.51113
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.1047 12.9726 9.36374 43.7453 10.0652

CAGE analysis