Hb_107298_010

Information

Type -
Description -
Location Contig107298: 566-1580
Sequence    

Annotation

kegg
ID pop:POPTR_0001s22130g
description POPTRDRAFT_815182; hypothetical protein
nr
ID XP_012066337.1
description PREDICTED: E3 ubiquitin-protein ligase RHF2A isoform X2 [Jatropha curcas]
swissprot
ID Q9ZT42
description E3 ubiquitin-protein ligase RHF2A OS=Arabidopsis thaliana GN=RHF2A PE=2 SV=1
trembl
ID A0A067L3B4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23898 PE=4 SV=1
Gene Ontology
ID GO:0005622
description e3 ubiquitin-protein ligase rhf2a-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02294: 242-402
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_107298_010 0.0 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A isoform X2 [Jatropha curcas]
2 Hb_004837_280 0.073622656 - - PREDICTED: uncharacterized protein LOC105648296 [Jatropha curcas]
3 Hb_005489_140 0.0816693494 - - PREDICTED: maspardin [Jatropha curcas]
4 Hb_001900_100 0.0912328224 - - PREDICTED: uncharacterized protein LOC105632664 isoform X1 [Jatropha curcas]
5 Hb_000159_120 0.0928541357 - - PREDICTED: uncharacterized protein LOC105632857 [Jatropha curcas]
6 Hb_001019_050 0.093116419 - - PREDICTED: importin-13 [Jatropha curcas]
7 Hb_003777_290 0.0949167119 - - polypyrimidine tract binding protein, putative [Ricinus communis]
8 Hb_000088_270 0.0956605977 - - PREDICTED: uncharacterized protein LOC105637003 [Jatropha curcas]
9 Hb_025336_020 0.0957331829 - - PREDICTED: PP2A regulatory subunit TAP46 [Jatropha curcas]
10 Hb_000342_050 0.0979151144 - - hypothetical protein POPTR_0006s24710g [Populus trichocarpa]
11 Hb_003626_050 0.0985647659 - - malic enzyme, putative [Ricinus communis]
12 Hb_007185_040 0.0995452831 - - PREDICTED: pyrroline-5-carboxylate reductase [Jatropha curcas]
13 Hb_003683_010 0.0997778942 - - longevity assurance factor, putative [Ricinus communis]
14 Hb_000144_120 0.1008120886 - - WD-repeat protein, putative [Ricinus communis]
15 Hb_012022_080 0.1009289699 - - ubiquitin-protein ligase, putative [Ricinus communis]
16 Hb_000157_070 0.1019615652 - - PREDICTED: alpha-N-acetylglucosaminidase [Jatropha curcas]
17 Hb_002995_040 0.1044329509 - - PREDICTED: probable serine/threonine-protein kinase dyrk1 isoform X1 [Jatropha curcas]
18 Hb_007441_280 0.1052078635 - - hypothetical protein JCGZ_14672 [Jatropha curcas]
19 Hb_002596_060 0.1058694634 - - conserved hypothetical protein [Ricinus communis]
20 Hb_089140_040 0.1075245851 - - PREDICTED: uncharacterized protein LOC105637966 [Jatropha curcas]

Gene co-expression network

sample Hb_107298_010 Hb_107298_010 Hb_004837_280 Hb_004837_280 Hb_107298_010--Hb_004837_280 Hb_005489_140 Hb_005489_140 Hb_107298_010--Hb_005489_140 Hb_001900_100 Hb_001900_100 Hb_107298_010--Hb_001900_100 Hb_000159_120 Hb_000159_120 Hb_107298_010--Hb_000159_120 Hb_001019_050 Hb_001019_050 Hb_107298_010--Hb_001019_050 Hb_003777_290 Hb_003777_290 Hb_107298_010--Hb_003777_290 Hb_000342_050 Hb_000342_050 Hb_004837_280--Hb_000342_050 Hb_001587_030 Hb_001587_030 Hb_004837_280--Hb_001587_030 Hb_002596_060 Hb_002596_060 Hb_004837_280--Hb_002596_060 Hb_001307_240 Hb_001307_240 Hb_004837_280--Hb_001307_240 Hb_001226_130 Hb_001226_130 Hb_004837_280--Hb_001226_130 Hb_025336_020 Hb_025336_020 Hb_005489_140--Hb_025336_020 Hb_089140_040 Hb_089140_040 Hb_005489_140--Hb_089140_040 Hb_005489_140--Hb_001019_050 Hb_083799_010 Hb_083799_010 Hb_005489_140--Hb_083799_010 Hb_008790_020 Hb_008790_020 Hb_005489_140--Hb_008790_020 Hb_001811_170 Hb_001811_170 Hb_001900_100--Hb_001811_170 Hb_001900_100--Hb_004837_280 Hb_000144_120 Hb_000144_120 Hb_001900_100--Hb_000144_120 Hb_004450_070 Hb_004450_070 Hb_001900_100--Hb_004450_070 Hb_019280_010 Hb_019280_010 Hb_001900_100--Hb_019280_010 Hb_012022_080 Hb_012022_080 Hb_000159_120--Hb_012022_080 Hb_008226_070 Hb_008226_070 Hb_000159_120--Hb_008226_070 Hb_003906_170 Hb_003906_170 Hb_000159_120--Hb_003906_170 Hb_000159_120--Hb_001019_050 Hb_001221_020 Hb_001221_020 Hb_000159_120--Hb_001221_020 Hb_000088_270 Hb_000088_270 Hb_001019_050--Hb_000088_270 Hb_001019_050--Hb_025336_020 Hb_000347_450 Hb_000347_450 Hb_001019_050--Hb_000347_450 Hb_021576_010 Hb_021576_010 Hb_003777_290--Hb_021576_010 Hb_000979_220 Hb_000979_220 Hb_003777_290--Hb_000979_220 Hb_004096_110 Hb_004096_110 Hb_003777_290--Hb_004096_110 Hb_011224_160 Hb_011224_160 Hb_003777_290--Hb_011224_160 Hb_000363_190 Hb_000363_190 Hb_003777_290--Hb_000363_190 Hb_005489_040 Hb_005489_040 Hb_003777_290--Hb_005489_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.6221 26.7234 27.6274 34.6642 10.5392 17.8152
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.015 13.7028 9.27291 55.0275 23.3594

CAGE analysis