Hb_000144_120

Information

Type -
Description -
Location Contig144: 215010-220626
Sequence    

Annotation

kegg
ID rcu:RCOM_0516960
description WD-repeat protein, putative (EC:2.3.1.48)
nr
ID XP_002528743.1
description WD-repeat protein, putative [Ricinus communis]
swissprot
ID A7RWD2
description Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog OS=Nematostella vectensis GN=v1g226592 PE=3 SV=1
trembl
ID B9SRX4
description Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog OS=Ricinus communis GN=RCOM_0516960 PE=3 SV=1
Gene Ontology
ID GO:0097361
description probable cytosolic iron-sulfur protein assembly protein ciao1 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11633: 214890-220647 , PASA_asmbl_11634: 216770-217584
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000144_120 0.0 - - WD-repeat protein, putative [Ricinus communis]
2 Hb_007441_280 0.0712744876 - - hypothetical protein JCGZ_14672 [Jatropha curcas]
3 Hb_012760_040 0.0858830322 - - PREDICTED: aconitate hydratase 1 [Jatropha curcas]
4 Hb_001004_140 0.0901156478 - - hypothetical protein JCGZ_26893 [Jatropha curcas]
5 Hb_000327_250 0.0908851307 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]
6 Hb_001900_100 0.0913665178 - - PREDICTED: uncharacterized protein LOC105632664 isoform X1 [Jatropha curcas]
7 Hb_001221_020 0.091397428 - - PREDICTED: probable aspartyl aminopeptidase [Jatropha curcas]
8 Hb_107298_010 0.1008120886 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A isoform X2 [Jatropha curcas]
9 Hb_006006_040 0.101107333 - - S-methyl-5-thioribose kinase isoform 2 [Theobroma cacao]
10 Hb_027760_060 0.1028096724 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
11 Hb_000345_320 0.1040694606 transcription factor TF Family: MYB-related PREDICTED: protein ALWAYS EARLY 2-like isoform X1 [Jatropha curcas]
12 Hb_004096_110 0.1048723718 - - PREDICTED: T-complex protein 1 subunit gamma-like [Jatropha curcas]
13 Hb_042474_010 0.1072219653 - - PREDICTED: adenylyltransferase and sulfurtransferase MOCS3 [Jatropha curcas]
14 Hb_000260_660 0.1072257043 - - conserved hypothetical protein [Ricinus communis]
15 Hb_008226_070 0.1080905786 - - PREDICTED: expansin-A8 [Jatropha curcas]
16 Hb_003777_290 0.1089501793 - - polypyrimidine tract binding protein, putative [Ricinus communis]
17 Hb_003544_030 0.1095719217 - - PREDICTED: citrate synthase, glyoxysomal [Jatropha curcas]
18 Hb_000209_100 0.1097974257 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X2 [Jatropha curcas]
19 Hb_003020_100 0.11004045 - - PREDICTED: transcription initiation factor IIA large subunit [Jatropha curcas]
20 Hb_005074_020 0.1112200455 - - PREDICTED: uncharacterized protein LOC105644455 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000144_120 Hb_000144_120 Hb_007441_280 Hb_007441_280 Hb_000144_120--Hb_007441_280 Hb_012760_040 Hb_012760_040 Hb_000144_120--Hb_012760_040 Hb_001004_140 Hb_001004_140 Hb_000144_120--Hb_001004_140 Hb_000327_250 Hb_000327_250 Hb_000144_120--Hb_000327_250 Hb_001900_100 Hb_001900_100 Hb_000144_120--Hb_001900_100 Hb_001221_020 Hb_001221_020 Hb_000144_120--Hb_001221_020 Hb_007441_280--Hb_001221_020 Hb_007441_280--Hb_001900_100 Hb_000159_120 Hb_000159_120 Hb_007441_280--Hb_000159_120 Hb_005081_020 Hb_005081_020 Hb_007441_280--Hb_005081_020 Hb_007441_280--Hb_000327_250 Hb_042474_010 Hb_042474_010 Hb_012760_040--Hb_042474_010 Hb_000190_090 Hb_000190_090 Hb_012760_040--Hb_000190_090 Hb_008226_070 Hb_008226_070 Hb_012760_040--Hb_008226_070 Hb_006916_110 Hb_006916_110 Hb_012760_040--Hb_006916_110 Hb_082741_010 Hb_082741_010 Hb_012760_040--Hb_082741_010 Hb_000008_090 Hb_000008_090 Hb_001004_140--Hb_000008_090 Hb_007185_040 Hb_007185_040 Hb_001004_140--Hb_007185_040 Hb_089140_040 Hb_089140_040 Hb_001004_140--Hb_089140_040 Hb_006468_010 Hb_006468_010 Hb_001004_140--Hb_006468_010 Hb_000174_140 Hb_000174_140 Hb_001004_140--Hb_000174_140 Hb_003544_030 Hb_003544_030 Hb_000327_250--Hb_003544_030 Hb_016347_010 Hb_016347_010 Hb_000327_250--Hb_016347_010 Hb_005663_110 Hb_005663_110 Hb_000327_250--Hb_005663_110 Hb_004096_110 Hb_004096_110 Hb_000327_250--Hb_004096_110 Hb_021576_010 Hb_021576_010 Hb_000327_250--Hb_021576_010 Hb_001434_080 Hb_001434_080 Hb_000327_250--Hb_001434_080 Hb_001811_170 Hb_001811_170 Hb_001900_100--Hb_001811_170 Hb_004837_280 Hb_004837_280 Hb_001900_100--Hb_004837_280 Hb_107298_010 Hb_107298_010 Hb_001900_100--Hb_107298_010 Hb_004450_070 Hb_004450_070 Hb_001900_100--Hb_004450_070 Hb_019280_010 Hb_019280_010 Hb_001900_100--Hb_019280_010 Hb_004880_150 Hb_004880_150 Hb_001221_020--Hb_004880_150 Hb_000841_050 Hb_000841_050 Hb_001221_020--Hb_000841_050 Hb_000025_190 Hb_000025_190 Hb_001221_020--Hb_000025_190 Hb_005648_010 Hb_005648_010 Hb_001221_020--Hb_005648_010 Hb_003776_060 Hb_003776_060 Hb_001221_020--Hb_003776_060 Hb_001493_150 Hb_001493_150 Hb_001221_020--Hb_001493_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.9277 16.3559 16.0757 22.7357 6.22786 7.49668
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.2593 8.68015 12.1411 32.9021 10.6351

CAGE analysis