Hb_012760_040

Information

Type -
Description -
Location Contig12760: 12218-19485
Sequence    

Annotation

kegg
ID rcu:RCOM_0782740
description aconitase, putative (EC:4.2.1.3)
nr
ID XP_012088458.1
description PREDICTED: aconitate hydratase 1 [Jatropha curcas]
swissprot
ID Q42560
description Aconitate hydratase 1 OS=Arabidopsis thaliana GN=ACO1 PE=1 SV=2
trembl
ID A0A067JMA6
description Aconitate hydratase OS=Jatropha curcas GN=JCGZ_25341 PE=3 SV=1
Gene Ontology
ID GO:0008152
description aconitate hydratase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08415: 12260-19440
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012760_040 0.0 - - PREDICTED: aconitate hydratase 1 [Jatropha curcas]
2 Hb_042474_010 0.0553162543 - - PREDICTED: adenylyltransferase and sulfurtransferase MOCS3 [Jatropha curcas]
3 Hb_000144_120 0.0858830322 - - WD-repeat protein, putative [Ricinus communis]
4 Hb_000190_090 0.0864578711 - - PREDICTED: uncharacterized protein LOC105649930 [Jatropha curcas]
5 Hb_008226_070 0.0987292319 - - PREDICTED: expansin-A8 [Jatropha curcas]
6 Hb_006916_110 0.0993144174 - - PREDICTED: probable tRNA (guanine(26)-N(2))-dimethyltransferase 2 isoform X2 [Jatropha curcas]
7 Hb_082741_010 0.1012775733 - - PREDICTED: uncharacterized protein LOC105649930 [Jatropha curcas]
8 Hb_001221_020 0.1021142595 - - PREDICTED: probable aspartyl aminopeptidase [Jatropha curcas]
9 Hb_011287_010 0.1039093105 - - ubiquitin-protein ligase, putative [Ricinus communis]
10 Hb_000327_250 0.1043608536 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]
11 Hb_012022_080 0.105023754 - - ubiquitin-protein ligase, putative [Ricinus communis]
12 Hb_004096_110 0.1109771498 - - PREDICTED: T-complex protein 1 subunit gamma-like [Jatropha curcas]
13 Hb_004880_150 0.1148867338 - - PREDICTED: uncharacterized protein LOC105632834 [Jatropha curcas]
14 Hb_016347_010 0.1155387055 - - protein transporter, putative [Ricinus communis]
15 Hb_021576_010 0.1170474971 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
16 Hb_003776_060 0.1186505242 - - PREDICTED: uncharacterized protein LOC105641220 [Jatropha curcas]
17 Hb_000209_100 0.1202706733 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X2 [Jatropha curcas]
18 Hb_000227_040 0.1203062656 - - Stem-specific protein TSJT1, putative [Ricinus communis]
19 Hb_001214_090 0.1209201515 - - PREDICTED: acyl-coenzyme A oxidase 4, peroxisomal [Jatropha curcas]
20 Hb_007441_280 0.1211226958 - - hypothetical protein JCGZ_14672 [Jatropha curcas]

Gene co-expression network

sample Hb_012760_040 Hb_012760_040 Hb_042474_010 Hb_042474_010 Hb_012760_040--Hb_042474_010 Hb_000144_120 Hb_000144_120 Hb_012760_040--Hb_000144_120 Hb_000190_090 Hb_000190_090 Hb_012760_040--Hb_000190_090 Hb_008226_070 Hb_008226_070 Hb_012760_040--Hb_008226_070 Hb_006916_110 Hb_006916_110 Hb_012760_040--Hb_006916_110 Hb_082741_010 Hb_082741_010 Hb_012760_040--Hb_082741_010 Hb_042474_010--Hb_000190_090 Hb_004880_150 Hb_004880_150 Hb_042474_010--Hb_004880_150 Hb_001221_020 Hb_001221_020 Hb_042474_010--Hb_001221_020 Hb_042474_010--Hb_006916_110 Hb_016347_010 Hb_016347_010 Hb_042474_010--Hb_016347_010 Hb_007441_280 Hb_007441_280 Hb_000144_120--Hb_007441_280 Hb_001004_140 Hb_001004_140 Hb_000144_120--Hb_001004_140 Hb_000327_250 Hb_000327_250 Hb_000144_120--Hb_000327_250 Hb_001900_100 Hb_001900_100 Hb_000144_120--Hb_001900_100 Hb_000144_120--Hb_001221_020 Hb_012022_080 Hb_012022_080 Hb_000190_090--Hb_012022_080 Hb_004096_110 Hb_004096_110 Hb_000190_090--Hb_004096_110 Hb_011224_160 Hb_011224_160 Hb_000190_090--Hb_011224_160 Hb_021576_010 Hb_021576_010 Hb_000190_090--Hb_021576_010 Hb_000190_090--Hb_016347_010 Hb_000159_120 Hb_000159_120 Hb_008226_070--Hb_000159_120 Hb_008226_070--Hb_012022_080 Hb_003226_120 Hb_003226_120 Hb_008226_070--Hb_003226_120 Hb_008226_070--Hb_000190_090 Hb_008226_070--Hb_001221_020 Hb_012325_010 Hb_012325_010 Hb_006916_110--Hb_012325_010 Hb_006916_110--Hb_021576_010 Hb_000342_050 Hb_000342_050 Hb_006916_110--Hb_000342_050 Hb_000209_100 Hb_000209_100 Hb_006916_110--Hb_000209_100 Hb_006916_110--Hb_000190_090 Hb_082741_010--Hb_006916_110 Hb_000345_320 Hb_000345_320 Hb_082741_010--Hb_000345_320 Hb_082741_010--Hb_042474_010 Hb_000347_450 Hb_000347_450 Hb_082741_010--Hb_000347_450 Hb_082741_010--Hb_000209_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.0645 23.8224 21.7862 33.9549 11.0357 9.74538
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.3984 21.63 21.5039 62.8367 18.5004

CAGE analysis