Hb_003226_120

Information

Type -
Description -
Location Contig3226: 72163-76026
Sequence    

Annotation

kegg
ID rcu:RCOM_1178670
description hypothetical protein
nr
ID XP_002523103.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9M015
description Uncharacterized protein At5g01610 OS=Arabidopsis thaliana GN=At5g01610 PE=1 SV=1
trembl
ID B9SAT4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1178670 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34164: 73530-74257 , PASA_asmbl_34165: 75508-76277
cDNA
(Sanger)
(ID:Location)		 011_O03.ab1: 73597-74257 , 018_P24.ab1: 73541-74229 , 035_N12.ab1: 73597-74257 , 039_D21.ab1: 73541-74229

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003226_120 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_008226_070 0.1053124848 - - PREDICTED: expansin-A8 [Jatropha curcas]
3 Hb_028872_110 0.127049129 - - PREDICTED: uncharacterized protein LOC105644776 [Jatropha curcas]
4 Hb_004079_080 0.1337133724 - - PREDICTED: ras-related protein RHN1-like [Jatropha curcas]
5 Hb_000159_120 0.1364699175 - - PREDICTED: uncharacterized protein LOC105632857 [Jatropha curcas]
6 Hb_003906_170 0.1440197316 - - alcohol dehydrogenase, putative [Ricinus communis]
7 Hb_007943_160 0.148365271 - - PREDICTED: aspartate aminotransferase, cytoplasmic [Jatropha curcas]
8 Hb_000621_020 0.1500106811 - - PREDICTED: mannose-6-phosphate isomerase 1 [Jatropha curcas]
9 Hb_012545_090 0.1512715915 - - hypothetical protein JCGZ_04320 [Jatropha curcas]
10 Hb_001726_110 0.1520975158 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 19 [Jatropha curcas]
11 Hb_002539_020 0.1536379995 - - hypothetical protein CISIN_1g007216mg [Citrus sinensis]
12 Hb_033501_010 0.1541501115 - - hypothetical protein JCGZ_21381 [Jatropha curcas]
13 Hb_001623_160 0.1552490993 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At2g33170 [Jatropha curcas]
14 Hb_119494_010 0.1559359778 - - PREDICTED: box C/D snoRNA protein 1 [Jatropha curcas]
15 Hb_012022_080 0.1588073737 - - ubiquitin-protein ligase, putative [Ricinus communis]
16 Hb_001104_230 0.1596984716 - - PREDICTED: fructose-bisphosphate aldolase cytoplasmic isozyme [Jatropha curcas]
17 Hb_012760_040 0.160798659 - - PREDICTED: aconitate hydratase 1 [Jatropha curcas]
18 Hb_001332_040 0.1608297906 - - PREDICTED: transcription initiation factor IIB [Fragaria vesca subsp. vesca]
19 Hb_000692_160 0.160876503 - - Transportin 1 isoform 1 [Theobroma cacao]
20 Hb_007441_280 0.1615158779 - - hypothetical protein JCGZ_14672 [Jatropha curcas]

Gene co-expression network

sample Hb_003226_120 Hb_003226_120 Hb_008226_070 Hb_008226_070 Hb_003226_120--Hb_008226_070 Hb_028872_110 Hb_028872_110 Hb_003226_120--Hb_028872_110 Hb_004079_080 Hb_004079_080 Hb_003226_120--Hb_004079_080 Hb_000159_120 Hb_000159_120 Hb_003226_120--Hb_000159_120 Hb_003906_170 Hb_003906_170 Hb_003226_120--Hb_003906_170 Hb_007943_160 Hb_007943_160 Hb_003226_120--Hb_007943_160 Hb_008226_070--Hb_000159_120 Hb_012022_080 Hb_012022_080 Hb_008226_070--Hb_012022_080 Hb_012760_040 Hb_012760_040 Hb_008226_070--Hb_012760_040 Hb_000190_090 Hb_000190_090 Hb_008226_070--Hb_000190_090 Hb_001221_020 Hb_001221_020 Hb_008226_070--Hb_001221_020 Hb_001104_230 Hb_001104_230 Hb_028872_110--Hb_001104_230 Hb_001157_200 Hb_001157_200 Hb_028872_110--Hb_001157_200 Hb_028872_110--Hb_000159_120 Hb_028872_110--Hb_003906_170 Hb_028872_110--Hb_008226_070 Hb_000621_020 Hb_000621_020 Hb_004079_080--Hb_000621_020 Hb_001214_090 Hb_001214_090 Hb_004079_080--Hb_001214_090 Hb_001623_160 Hb_001623_160 Hb_004079_080--Hb_001623_160 Hb_001971_060 Hb_001971_060 Hb_004079_080--Hb_001971_060 Hb_016522_010 Hb_016522_010 Hb_004079_080--Hb_016522_010 Hb_100147_010 Hb_100147_010 Hb_004079_080--Hb_100147_010 Hb_000159_120--Hb_012022_080 Hb_000159_120--Hb_003906_170 Hb_001019_050 Hb_001019_050 Hb_000159_120--Hb_001019_050 Hb_000159_120--Hb_001221_020 Hb_107298_010 Hb_107298_010 Hb_000159_120--Hb_107298_010 Hb_000692_160 Hb_000692_160 Hb_003906_170--Hb_000692_160 Hb_005081_020 Hb_005081_020 Hb_003906_170--Hb_005081_020 Hb_083799_010 Hb_083799_010 Hb_003906_170--Hb_083799_010 Hb_000327_250 Hb_000327_250 Hb_003906_170--Hb_000327_250 Hb_075315_010 Hb_075315_010 Hb_003906_170--Hb_075315_010 Hb_000011_290 Hb_000011_290 Hb_007943_160--Hb_000011_290 Hb_012545_090 Hb_012545_090 Hb_007943_160--Hb_012545_090 Hb_006275_010 Hb_006275_010 Hb_007943_160--Hb_006275_010 Hb_007943_160--Hb_004079_080 Hb_039145_010 Hb_039145_010 Hb_007943_160--Hb_039145_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.3404 18.4517 13.6201 47.0511 12.9534 15.8009
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.9477 23.9391 15.3878 101.488 12.8092

CAGE analysis