Hb_028872_110

Information

Type -
Description -
Location Contig28872: 77637-80986
Sequence    

Annotation

kegg
ID cit:102620652
description uncharacterized LOC102620652
nr
ID XP_012085634.1
description PREDICTED: uncharacterized protein LOC105644776 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K4Q4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17927 PE=4 SV=1
Gene Ontology
ID GO:0005634
description zinc finger protein constans-like 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028872_110 0.0 - - PREDICTED: uncharacterized protein LOC105644776 [Jatropha curcas]
2 Hb_001104_230 0.1147829915 - - PREDICTED: fructose-bisphosphate aldolase cytoplasmic isozyme [Jatropha curcas]
3 Hb_001157_200 0.1206286196 - - PREDICTED: uncharacterized protein LOC105645131 [Jatropha curcas]
4 Hb_000159_120 0.1236139348 - - PREDICTED: uncharacterized protein LOC105632857 [Jatropha curcas]
5 Hb_003906_170 0.1257569936 - - alcohol dehydrogenase, putative [Ricinus communis]
6 Hb_008226_070 0.1260384926 - - PREDICTED: expansin-A8 [Jatropha curcas]
7 Hb_003226_120 0.127049129 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003544_030 0.1282280139 - - PREDICTED: citrate synthase, glyoxysomal [Jatropha curcas]
9 Hb_007441_280 0.1283904675 - - hypothetical protein JCGZ_14672 [Jatropha curcas]
10 Hb_002675_140 0.132906269 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]
11 Hb_000327_250 0.1338010887 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]
12 Hb_135757_020 0.1359994017 - - hypothetical protein AMTR_s00420p00013340 [Amborella trichopoda]
13 Hb_001221_020 0.1403171063 - - PREDICTED: probable aspartyl aminopeptidase [Jatropha curcas]
14 Hb_002686_310 0.1418922813 - - PREDICTED: aquaporin SIP1-1 [Jatropha curcas]
15 Hb_003090_100 0.1429385733 - - PREDICTED: uncharacterized protein LOC105646670 [Jatropha curcas]
16 Hb_000692_160 0.1432602446 - - Transportin 1 isoform 1 [Theobroma cacao]
17 Hb_000094_210 0.1433688991 - - glucose-6-phosphate isomerase, putative [Ricinus communis]
18 Hb_132880_040 0.1434274361 - - PREDICTED: protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1-like isoform X2 [Jatropha curcas]
19 Hb_001104_100 0.1451645087 - - RecName: Full=Enolase 2; AltName: Full=2-phospho-D-glycerate hydro-lyase 2; AltName: Full=2-phosphoglycerate dehydratase 2; AltName: Allergen=Hev b 9 [Hevea brasiliensis]
20 Hb_001318_050 0.1453430568 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]

Gene co-expression network

sample Hb_028872_110 Hb_028872_110 Hb_001104_230 Hb_001104_230 Hb_028872_110--Hb_001104_230 Hb_001157_200 Hb_001157_200 Hb_028872_110--Hb_001157_200 Hb_000159_120 Hb_000159_120 Hb_028872_110--Hb_000159_120 Hb_003906_170 Hb_003906_170 Hb_028872_110--Hb_003906_170 Hb_008226_070 Hb_008226_070 Hb_028872_110--Hb_008226_070 Hb_003226_120 Hb_003226_120 Hb_028872_110--Hb_003226_120 Hb_000025_190 Hb_000025_190 Hb_001104_230--Hb_000025_190 Hb_004429_090 Hb_004429_090 Hb_001104_230--Hb_004429_090 Hb_001221_020 Hb_001221_020 Hb_001104_230--Hb_001221_020 Hb_003776_060 Hb_003776_060 Hb_001104_230--Hb_003776_060 Hb_062537_010 Hb_062537_010 Hb_001104_230--Hb_062537_010 Hb_004880_150 Hb_004880_150 Hb_001104_230--Hb_004880_150 Hb_132880_040 Hb_132880_040 Hb_001157_200--Hb_132880_040 Hb_003544_030 Hb_003544_030 Hb_001157_200--Hb_003544_030 Hb_007747_080 Hb_007747_080 Hb_001157_200--Hb_007747_080 Hb_000984_170 Hb_000984_170 Hb_001157_200--Hb_000984_170 Hb_006452_120 Hb_006452_120 Hb_001157_200--Hb_006452_120 Hb_005663_110 Hb_005663_110 Hb_001157_200--Hb_005663_110 Hb_012022_080 Hb_012022_080 Hb_000159_120--Hb_012022_080 Hb_000159_120--Hb_008226_070 Hb_000159_120--Hb_003906_170 Hb_001019_050 Hb_001019_050 Hb_000159_120--Hb_001019_050 Hb_000159_120--Hb_001221_020 Hb_107298_010 Hb_107298_010 Hb_000159_120--Hb_107298_010 Hb_000692_160 Hb_000692_160 Hb_003906_170--Hb_000692_160 Hb_005081_020 Hb_005081_020 Hb_003906_170--Hb_005081_020 Hb_083799_010 Hb_083799_010 Hb_003906_170--Hb_083799_010 Hb_000327_250 Hb_000327_250 Hb_003906_170--Hb_000327_250 Hb_075315_010 Hb_075315_010 Hb_003906_170--Hb_075315_010 Hb_008226_070--Hb_012022_080 Hb_012760_040 Hb_012760_040 Hb_008226_070--Hb_012760_040 Hb_008226_070--Hb_003226_120 Hb_000190_090 Hb_000190_090 Hb_008226_070--Hb_000190_090 Hb_008226_070--Hb_001221_020 Hb_004079_080 Hb_004079_080 Hb_003226_120--Hb_004079_080 Hb_003226_120--Hb_000159_120 Hb_003226_120--Hb_003906_170 Hb_007943_160 Hb_007943_160 Hb_003226_120--Hb_007943_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.710098 1.29184 0.634659 2.91698 1.14964 0.62694
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.65204 0.979861 1.28537 3.87866 1.01088

CAGE analysis