Hb_100147_010

Information

Type -
Description -
Location Contig100147: 143-937
Sequence    

Annotation

kegg
ID egr:104421643
description exosome complex component MTR3
nr
ID XP_012064793.1
description PREDICTED: exosome complex component MTR3 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L6C9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05498 PE=4 SV=1
Gene Ontology
ID GO:0005634
description exosome complex component mtr3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_100147_010 0.0 - - PREDICTED: exosome complex component MTR3 [Jatropha curcas]
2 Hb_000251_030 0.1056457075 - - nicotinate phosphoribosyltransferase, putative [Ricinus communis]
3 Hb_000381_110 0.1062569771 - - PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like isoform X2 [Jatropha curcas]
4 Hb_029385_010 0.1102582314 - - CTP synthase family protein [Populus trichocarpa]
5 Hb_001971_060 0.11155511 - - PREDICTED: 66 kDa stress protein-like [Populus euphratica]
6 Hb_001510_020 0.116072372 - - Diaminopimelate epimerase, putative [Ricinus communis]
7 Hb_001623_160 0.1244519263 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At2g33170 [Jatropha curcas]
8 Hb_000286_060 0.1254972436 - - PREDICTED: uncharacterized protein LOC105633357 [Jatropha curcas]
9 Hb_001728_140 0.1258572704 - - -
10 Hb_004079_080 0.1262385308 - - PREDICTED: ras-related protein RHN1-like [Jatropha curcas]
11 Hb_000548_070 0.1324572311 desease resistance Gene Name: Synthase_beta RecName: Full=ATP synthase subunit beta, mitochondrial; Flags: Precursor [Hevea brasiliensis]
12 Hb_008226_070 0.1345538542 - - PREDICTED: expansin-A8 [Jatropha curcas]
13 Hb_023827_020 0.1347972404 - - beta-1,3-glucanase 1 [Ziziphus jujuba]
14 Hb_001221_020 0.1354946634 - - PREDICTED: probable aspartyl aminopeptidase [Jatropha curcas]
15 Hb_001318_050 0.1357197178 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
16 Hb_000723_170 0.136442808 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
17 Hb_000684_520 0.1364810995 - - glutathione S-transferase L3-like [Jatropha curcas]
18 Hb_004429_090 0.1402879078 - - PREDICTED: ras GTPase-activating protein-binding protein 1-like isoform X1 [Jatropha curcas]
19 Hb_001214_090 0.141935907 - - PREDICTED: acyl-coenzyme A oxidase 4, peroxisomal [Jatropha curcas]
20 Hb_028487_170 0.1432125168 - - PREDICTED: uncharacterized protein LOC105634088 [Jatropha curcas]

Gene co-expression network

sample Hb_100147_010 Hb_100147_010 Hb_000251_030 Hb_000251_030 Hb_100147_010--Hb_000251_030 Hb_000381_110 Hb_000381_110 Hb_100147_010--Hb_000381_110 Hb_029385_010 Hb_029385_010 Hb_100147_010--Hb_029385_010 Hb_001971_060 Hb_001971_060 Hb_100147_010--Hb_001971_060 Hb_001510_020 Hb_001510_020 Hb_100147_010--Hb_001510_020 Hb_001623_160 Hb_001623_160 Hb_100147_010--Hb_001623_160 Hb_002477_290 Hb_002477_290 Hb_000251_030--Hb_002477_290 Hb_007218_120 Hb_007218_120 Hb_000251_030--Hb_007218_120 Hb_001728_140 Hb_001728_140 Hb_000251_030--Hb_001728_140 Hb_003376_180 Hb_003376_180 Hb_000251_030--Hb_003376_180 Hb_006059_010 Hb_006059_010 Hb_000251_030--Hb_006059_010 Hb_000548_070 Hb_000548_070 Hb_000251_030--Hb_000548_070 Hb_000381_110--Hb_001971_060 Hb_000025_190 Hb_000025_190 Hb_000381_110--Hb_000025_190 Hb_000381_110--Hb_000251_030 Hb_001221_020 Hb_001221_020 Hb_000381_110--Hb_001221_020 Hb_002631_010 Hb_002631_010 Hb_000381_110--Hb_002631_010 Hb_029385_010--Hb_001728_140 Hb_029385_010--Hb_001510_020 Hb_029385_010--Hb_000251_030 Hb_029385_010--Hb_001971_060 Hb_029385_010--Hb_000381_110 Hb_001971_060--Hb_001623_160 Hb_004079_080 Hb_004079_080 Hb_001971_060--Hb_004079_080 Hb_001971_060--Hb_001728_140 Hb_001510_020--Hb_000548_070 Hb_001510_020--Hb_001728_140 Hb_001510_020--Hb_002477_290 Hb_000684_520 Hb_000684_520 Hb_001510_020--Hb_000684_520 Hb_000210_060 Hb_000210_060 Hb_001510_020--Hb_000210_060 Hb_001510_020--Hb_000251_030 Hb_001214_090 Hb_001214_090 Hb_001623_160--Hb_001214_090 Hb_001623_160--Hb_000381_110 Hb_003038_140 Hb_003038_140 Hb_001623_160--Hb_003038_140 Hb_001623_160--Hb_004079_080 Hb_001332_040 Hb_001332_040 Hb_001623_160--Hb_001332_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.20006 3.0981 3.00543 8.40569 1.49879 1.07104
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.1676 5.00469 6.14176 14.1989 5.384

CAGE analysis