Hb_006275_010

Information

Type -
Description -
Location Contig6275: 11622-13475
Sequence    

Annotation

kegg
ID tcc:TCM_039193
description Ribulose bisphosphate carboxylase family protein
nr
ID XP_012074043.1
description PREDICTED: ribulose bisphosphate carboxylase small chain clone 512-like [Jatropha curcas]
swissprot
ID O64416
description Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Marchantia paleacea GN=RBCS PE=2 SV=1
trembl
ID A0A067KN15
description Ribulose bisphosphate carboxylase small chain OS=Jatropha curcas GN=JCGZ_08657 PE=3 SV=1
Gene Ontology
ID GO:0004497
description ribulose bisphosphate carboxylase small chain clone 512-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51730: 11619-13433
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006275_010 0.0 - - PREDICTED: ribulose bisphosphate carboxylase small chain clone 512-like [Jatropha curcas]
2 Hb_000056_220 0.1560907741 - - PREDICTED: HVA22-like protein c [Jatropha curcas]
3 Hb_007943_160 0.1725974218 - - PREDICTED: aspartate aminotransferase, cytoplasmic [Jatropha curcas]
4 Hb_000915_070 0.2049755144 - - ATP binding protein, putative [Ricinus communis]
5 Hb_000120_390 0.211916611 - - PREDICTED: uncharacterized transporter YBR287W-like [Jatropha curcas]
6 Hb_001206_090 0.2205383934 - - pyruvate decarboxylase [Hevea brasiliensis]
7 Hb_004976_050 0.2218172939 - - -
8 Hb_000093_150 0.2244338811 - - 6-phosphogluconolactonase, putative [Ricinus communis]
9 Hb_158092_060 0.2263284587 - - aspartate semialdehyde dehydrogenase, putative [Ricinus communis]
10 Hb_000005_250 0.2285457626 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000471_080 0.2303199906 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
12 Hb_000165_210 0.2331111236 - - PREDICTED: trihelix transcription factor ASIL2 isoform X2 [Jatropha curcas]
13 Hb_000922_010 0.2349835884 - - hypothetical protein JCGZ_11488 [Jatropha curcas]
14 Hb_000209_110 0.2353608509 - - PREDICTED: receptor-like protein kinase BRI1-like 3 [Jatropha curcas]
15 Hb_003428_100 0.2376286881 - - Polygalacturonase precursor, putative [Ricinus communis]
16 Hb_003073_180 0.2382819408 - - hypothetical protein JCGZ_20198 [Jatropha curcas]
17 Hb_004143_120 0.2422766167 - - PREDICTED: serine/threonine-protein kinase CTR1 [Jatropha curcas]
18 Hb_183623_010 0.2457461046 - - aldo-keto reductase, putative [Ricinus communis]
19 Hb_001390_030 0.2466229728 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
20 Hb_004462_010 0.2468371481 - - PREDICTED: primary amine oxidase-like [Jatropha curcas]

Gene co-expression network

sample Hb_006275_010 Hb_006275_010 Hb_000056_220 Hb_000056_220 Hb_006275_010--Hb_000056_220 Hb_007943_160 Hb_007943_160 Hb_006275_010--Hb_007943_160 Hb_000915_070 Hb_000915_070 Hb_006275_010--Hb_000915_070 Hb_000120_390 Hb_000120_390 Hb_006275_010--Hb_000120_390 Hb_001206_090 Hb_001206_090 Hb_006275_010--Hb_001206_090 Hb_004976_050 Hb_004976_050 Hb_006275_010--Hb_004976_050 Hb_000471_080 Hb_000471_080 Hb_000056_220--Hb_000471_080 Hb_007545_140 Hb_007545_140 Hb_000056_220--Hb_007545_140 Hb_003602_070 Hb_003602_070 Hb_000056_220--Hb_003602_070 Hb_000056_220--Hb_000915_070 Hb_003893_140 Hb_003893_140 Hb_000056_220--Hb_003893_140 Hb_003226_120 Hb_003226_120 Hb_007943_160--Hb_003226_120 Hb_000011_290 Hb_000011_290 Hb_007943_160--Hb_000011_290 Hb_012545_090 Hb_012545_090 Hb_007943_160--Hb_012545_090 Hb_004079_080 Hb_004079_080 Hb_007943_160--Hb_004079_080 Hb_039145_010 Hb_039145_010 Hb_007943_160--Hb_039145_010 Hb_025254_020 Hb_025254_020 Hb_000915_070--Hb_025254_020 Hb_001959_030 Hb_001959_030 Hb_000915_070--Hb_001959_030 Hb_000098_310 Hb_000098_310 Hb_000915_070--Hb_000098_310 Hb_009823_010 Hb_009823_010 Hb_000915_070--Hb_009823_010 Hb_002597_010 Hb_002597_010 Hb_000915_070--Hb_002597_010 Hb_000580_070 Hb_000580_070 Hb_000915_070--Hb_000580_070 Hb_000165_210 Hb_000165_210 Hb_000120_390--Hb_000165_210 Hb_000318_200 Hb_000318_200 Hb_000120_390--Hb_000318_200 Hb_000417_320 Hb_000417_320 Hb_000120_390--Hb_000417_320 Hb_000414_110 Hb_000414_110 Hb_000120_390--Hb_000414_110 Hb_181110_010 Hb_181110_010 Hb_000120_390--Hb_181110_010 Hb_000120_390--Hb_003226_120 Hb_000645_210 Hb_000645_210 Hb_001206_090--Hb_000645_210 Hb_001206_090--Hb_000165_210 Hb_127886_010 Hb_127886_010 Hb_001206_090--Hb_127886_010 Hb_001206_090--Hb_000098_310 Hb_000928_040 Hb_000928_040 Hb_001206_090--Hb_000928_040 Hb_004195_110 Hb_004195_110 Hb_001206_090--Hb_004195_110 Hb_004976_050--Hb_000011_290 Hb_138710_010 Hb_138710_010 Hb_004976_050--Hb_138710_010 Hb_094437_060 Hb_094437_060 Hb_004976_050--Hb_094437_060 Hb_002849_090 Hb_002849_090 Hb_004976_050--Hb_002849_090 Hb_000879_190 Hb_000879_190 Hb_004976_050--Hb_000879_190 Hb_158092_060 Hb_158092_060 Hb_004976_050--Hb_158092_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.9616 12.5508 2.66512 29.7698 5.98765 4.39898
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.8415 8.2022 13.6108 159.034 3.37068

CAGE analysis