Hb_158092_060

Information

Type -
Description -
Location Contig158092: 49537-52572
Sequence    

Annotation

kegg
ID rcu:RCOM_1438420
description aspartate semialdehyde dehydrogenase, putative
nr
ID XP_002512674.1
description aspartate semialdehyde dehydrogenase, putative [Ricinus communis]
swissprot
ID Q55CU8
description Random slug protein 5 OS=Dictyostelium discoideum GN=rsc5 PE=2 SV=1
trembl
ID B9RG05
description Aspartate semialdehyde dehydrogenase, putative OS=Ricinus communis GN=RCOM_1438420 PE=4 SV=1
Gene Ontology
ID GO:0005622
description random slug protein 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13916: 51389-52674
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_158092_060 0.0 - - aspartate semialdehyde dehydrogenase, putative [Ricinus communis]
2 Hb_001004_100 0.1508179241 - - ATP binding protein, putative [Ricinus communis]
3 Hb_000675_060 0.1795215491 - - cytochrome P450, putative [Ricinus communis]
4 Hb_000471_080 0.1806378833 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
5 Hb_000922_010 0.1932061765 - - hypothetical protein JCGZ_11488 [Jatropha curcas]
6 Hb_009545_010 0.1959069471 transcription factor TF Family: GNAT Acetyltransferase [Medicago truncatula]
7 Hb_002471_260 0.204374236 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105634154 [Jatropha curcas]
8 Hb_000879_190 0.207317573 - - conserved hypothetical protein [Ricinus communis]
9 Hb_029921_030 0.2096849866 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004976_050 0.2146720286 - - -
11 Hb_002835_350 0.2173673074 - - PREDICTED: uncharacterized protein LOC105640319 [Jatropha curcas]
12 Hb_000116_590 0.2175894743 - - PREDICTED: splicing factor, suppressor of white-apricot homolog [Malus domestica]
13 Hb_000165_210 0.219648472 - - PREDICTED: trihelix transcription factor ASIL2 isoform X2 [Jatropha curcas]
14 Hb_005152_010 0.2197553962 - - hypothetical protein JCGZ_22048 [Jatropha curcas]
15 Hb_001776_190 0.2236397385 - - PREDICTED: protein kinase 2A, chloroplastic-like [Jatropha curcas]
16 Hb_006275_010 0.2263284587 - - PREDICTED: ribulose bisphosphate carboxylase small chain clone 512-like [Jatropha curcas]
17 Hb_001390_030 0.2294717321 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
18 Hb_002057_010 0.2297145302 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
19 Hb_000300_130 0.2307201899 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105141503 [Populus euphratica]
20 Hb_138710_010 0.2308463983 - - Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Gossypium arboreum]

Gene co-expression network

sample Hb_158092_060 Hb_158092_060 Hb_001004_100 Hb_001004_100 Hb_158092_060--Hb_001004_100 Hb_000675_060 Hb_000675_060 Hb_158092_060--Hb_000675_060 Hb_000471_080 Hb_000471_080 Hb_158092_060--Hb_000471_080 Hb_000922_010 Hb_000922_010 Hb_158092_060--Hb_000922_010 Hb_009545_010 Hb_009545_010 Hb_158092_060--Hb_009545_010 Hb_002471_260 Hb_002471_260 Hb_158092_060--Hb_002471_260 Hb_001123_010 Hb_001123_010 Hb_001004_100--Hb_001123_010 Hb_012753_190 Hb_012753_190 Hb_001004_100--Hb_012753_190 Hb_029904_010 Hb_029904_010 Hb_001004_100--Hb_029904_010 Hb_002849_150 Hb_002849_150 Hb_001004_100--Hb_002849_150 Hb_000653_010 Hb_000653_010 Hb_001004_100--Hb_000653_010 Hb_000061_090 Hb_000061_090 Hb_000675_060--Hb_000061_090 Hb_000675_060--Hb_001004_100 Hb_003947_040 Hb_003947_040 Hb_000675_060--Hb_003947_040 Hb_000675_060--Hb_002471_260 Hb_003592_030 Hb_003592_030 Hb_000675_060--Hb_003592_030 Hb_029510_110 Hb_029510_110 Hb_000471_080--Hb_029510_110 Hb_000614_180 Hb_000614_180 Hb_000471_080--Hb_000614_180 Hb_001366_250 Hb_001366_250 Hb_000471_080--Hb_001366_250 Hb_005000_310 Hb_005000_310 Hb_000471_080--Hb_005000_310 Hb_000140_190 Hb_000140_190 Hb_000471_080--Hb_000140_190 Hb_005152_010 Hb_005152_010 Hb_000922_010--Hb_005152_010 Hb_000922_010--Hb_001004_100 Hb_000922_010--Hb_000471_080 Hb_000922_010--Hb_001123_010 Hb_030982_060 Hb_030982_060 Hb_000922_010--Hb_030982_060 Hb_000152_810 Hb_000152_810 Hb_009545_010--Hb_000152_810 Hb_001504_220 Hb_001504_220 Hb_009545_010--Hb_001504_220 Hb_002182_050 Hb_002182_050 Hb_009545_010--Hb_002182_050 Hb_050203_010 Hb_050203_010 Hb_009545_010--Hb_050203_010 Hb_009545_010--Hb_001004_100 Hb_000984_080 Hb_000984_080 Hb_009545_010--Hb_000984_080 Hb_028872_150 Hb_028872_150 Hb_002471_260--Hb_028872_150 Hb_029921_030 Hb_029921_030 Hb_002471_260--Hb_029921_030 Hb_003972_060 Hb_003972_060 Hb_002471_260--Hb_003972_060 Hb_002539_010 Hb_002539_010 Hb_002471_260--Hb_002539_010 Hb_011633_040 Hb_011633_040 Hb_002471_260--Hb_011633_040 Hb_021409_140 Hb_021409_140 Hb_002471_260--Hb_021409_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.462017 1.09331 0.960325 3.06655 0 0.0188804
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.902448 2.6459 1.49992 16.1342 1.13464

CAGE analysis