Hb_000140_190

Information

Type -
Description -
Location Contig140: 145915-148744
Sequence    

Annotation

kegg
ID rcu:RCOM_1616520
description acc synthase, putative (EC:4.4.1.14)
nr
ID XP_002511916.1
description acc synthase, putative [Ricinus communis]
swissprot
ID Q9MB95
description 1-aminocyclopropane-1-carboxylate synthase 1 OS=Prunus mume GN=ACS1 PE=2 SV=1
trembl
ID B9RDX7
description Acc synthase, putative OS=Ricinus communis GN=RCOM_1616520 PE=3 SV=1
Gene Ontology
ID GO:0016847
description 1-aminocyclopropane-1-carboxylate synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000140_190 0.0 - - acc synthase, putative [Ricinus communis]
2 Hb_000748_070 0.141224898 transcription factor TF Family: WRKY hypothetical protein POPTR_0005s22480g [Populus trichocarpa]
3 Hb_002057_010 0.1427573128 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
4 Hb_107201_010 0.1630296739 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_26658 [Jatropha curcas]
5 Hb_148435_010 0.1784482259 - - glutathione s-transferase, putative [Ricinus communis]
6 Hb_003392_030 0.1827654904 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000471_080 0.183335146 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
8 Hb_005000_040 0.1844834265 - - ACC oxidase ACCO2 [Manihot esculenta]
9 Hb_061195_010 0.1882140538 - - Galactose oxidase precursor, putative [Ricinus communis]
10 Hb_012239_080 0.190291764 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 4-like [Jatropha curcas]
11 Hb_029510_110 0.2003070407 - - PREDICTED: protein PLANT CADMIUM RESISTANCE 8-like [Jatropha curcas]
12 Hb_004195_240 0.2067822665 - - Peroxidase 72 precursor, putative [Ricinus communis]
13 Hb_007101_210 0.2105230311 - - UDP-glucosyltransferase, putative [Ricinus communis]
14 Hb_001268_330 0.215761609 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
15 Hb_026650_010 0.2168729456 - - nitrate transporter, putative [Ricinus communis]
16 Hb_000012_040 0.2181794378 transcription factor TF Family: MYB-related PREDICTED: transcription factor RAX2-like [Populus euphratica]
17 Hb_001936_030 0.2191338475 - - PREDICTED: polygalacturonase At1g48100 isoform X1 [Jatropha curcas]
18 Hb_000614_180 0.2218134793 - - -
19 Hb_004055_180 0.2230170278 - - cell wall invertase [Manihot esculenta]
20 Hb_002248_020 0.2241894295 transcription factor TF Family: NAC PREDICTED: transcription factor JUNGBRUNNEN 1-like isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_000140_190 Hb_000140_190 Hb_000748_070 Hb_000748_070 Hb_000140_190--Hb_000748_070 Hb_002057_010 Hb_002057_010 Hb_000140_190--Hb_002057_010 Hb_107201_010 Hb_107201_010 Hb_000140_190--Hb_107201_010 Hb_148435_010 Hb_148435_010 Hb_000140_190--Hb_148435_010 Hb_003392_030 Hb_003392_030 Hb_000140_190--Hb_003392_030 Hb_000471_080 Hb_000471_080 Hb_000140_190--Hb_000471_080 Hb_000748_070--Hb_002057_010 Hb_004195_240 Hb_004195_240 Hb_000748_070--Hb_004195_240 Hb_000748_070--Hb_148435_010 Hb_004055_180 Hb_004055_180 Hb_000748_070--Hb_004055_180 Hb_000563_610 Hb_000563_610 Hb_000748_070--Hb_000563_610 Hb_001936_030 Hb_001936_030 Hb_000748_070--Hb_001936_030 Hb_005000_040 Hb_005000_040 Hb_002057_010--Hb_005000_040 Hb_007044_070 Hb_007044_070 Hb_002057_010--Hb_007044_070 Hb_001268_330 Hb_001268_330 Hb_002057_010--Hb_001268_330 Hb_000256_100 Hb_000256_100 Hb_002057_010--Hb_000256_100 Hb_029510_110 Hb_029510_110 Hb_107201_010--Hb_029510_110 Hb_001004_100 Hb_001004_100 Hb_107201_010--Hb_001004_100 Hb_061195_010 Hb_061195_010 Hb_107201_010--Hb_061195_010 Hb_012239_080 Hb_012239_080 Hb_107201_010--Hb_012239_080 Hb_107201_010--Hb_000471_080 Hb_148435_010--Hb_004195_240 Hb_035583_010 Hb_035583_010 Hb_148435_010--Hb_035583_010 Hb_000347_550 Hb_000347_550 Hb_148435_010--Hb_000347_550 Hb_148435_010--Hb_061195_010 Hb_148435_010--Hb_005000_040 Hb_026650_010 Hb_026650_010 Hb_003392_030--Hb_026650_010 Hb_003392_030--Hb_035583_010 Hb_032621_010 Hb_032621_010 Hb_003392_030--Hb_032621_010 Hb_003392_030--Hb_001936_030 Hb_003166_020 Hb_003166_020 Hb_003392_030--Hb_003166_020 Hb_050898_020 Hb_050898_020 Hb_003392_030--Hb_050898_020 Hb_000471_080--Hb_029510_110 Hb_000614_180 Hb_000614_180 Hb_000471_080--Hb_000614_180 Hb_001366_250 Hb_001366_250 Hb_000471_080--Hb_001366_250 Hb_005000_310 Hb_005000_310 Hb_000471_080--Hb_005000_310 Hb_158092_060 Hb_158092_060 Hb_000471_080--Hb_158092_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.129296 0.0864957 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0318151 0.0500591 0.0469961 1.08924 0.0523275

CAGE analysis