Hb_005000_040

Information

Type -
Description -
Location Contig5000: 49544-50864
Sequence    

Annotation

kegg
ID rcu:RCOM_1047760
description 1-aminocyclopropane-1-carboxylate oxidase, putative (EC:1.14.17.4)
nr
ID AAX84675.1
description ACC oxidase ACCO2 [Manihot esculenta]
swissprot
ID Q9ZUN4
description 1-aminocyclopropane-1-carboxylate oxidase 1 OS=Arabidopsis thaliana GN=ACO1 PE=2 SV=1
trembl
ID Q52QX6
description ACC oxidase ACCO2 OS=Manihot esculenta PE=2 SV=1
Gene Ontology
ID GO:0009815
description 1-aminocyclopropane-1-carboxylate oxidase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45784: 49597-50607
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005000_040 0.0 - - ACC oxidase ACCO2 [Manihot esculenta]
2 Hb_002057_010 0.1155506094 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
3 Hb_148435_010 0.1303970601 - - glutathione s-transferase, putative [Ricinus communis]
4 Hb_007044_070 0.1314495049 - - PREDICTED: tetraketide alpha-pyrone reductase 1-like [Jatropha curcas]
5 Hb_000748_070 0.1499907298 transcription factor TF Family: WRKY hypothetical protein POPTR_0005s22480g [Populus trichocarpa]
6 Hb_000086_730 0.1522382334 - - PREDICTED: feruloyl CoA ortho-hydroxylase 1-like [Jatropha curcas]
7 Hb_001936_030 0.1593338645 - - PREDICTED: polygalacturonase At1g48100 isoform X1 [Jatropha curcas]
8 Hb_080225_010 0.1631342889 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
9 Hb_001268_330 0.1682132302 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
10 Hb_000256_100 0.1714609434 transcription factor TF Family: ERF PPLZ02 family protein [Populus trichocarpa]
11 Hb_000614_180 0.1736794293 - - -
12 Hb_000917_330 0.1769791279 - - PREDICTED: leucoanthocyanidin reductase-like [Jatropha curcas]
13 Hb_025469_040 0.1770151769 - - PREDICTED: acidic mammalian chitinase-like [Jatropha curcas]
14 Hb_004195_240 0.1771131278 - - Peroxidase 72 precursor, putative [Ricinus communis]
15 Hb_131864_020 0.1791034686 - - PREDICTED: anthocyanidin reductase [Jatropha curcas]
16 Hb_061195_010 0.1792688126 - - Galactose oxidase precursor, putative [Ricinus communis]
17 Hb_000772_070 0.1835284928 - - PREDICTED: uncharacterized protein LOC105649697 [Jatropha curcas]
18 Hb_000140_190 0.1844834265 - - acc synthase, putative [Ricinus communis]
19 Hb_000625_130 0.1849375245 - - PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase [Jatropha curcas]
20 Hb_173448_010 0.1900956551 - - PREDICTED: galactose oxidase-like [Jatropha curcas]

Gene co-expression network

sample Hb_005000_040 Hb_005000_040 Hb_002057_010 Hb_002057_010 Hb_005000_040--Hb_002057_010 Hb_148435_010 Hb_148435_010 Hb_005000_040--Hb_148435_010 Hb_007044_070 Hb_007044_070 Hb_005000_040--Hb_007044_070 Hb_000748_070 Hb_000748_070 Hb_005000_040--Hb_000748_070 Hb_000086_730 Hb_000086_730 Hb_005000_040--Hb_000086_730 Hb_001936_030 Hb_001936_030 Hb_005000_040--Hb_001936_030 Hb_002057_010--Hb_000748_070 Hb_000140_190 Hb_000140_190 Hb_002057_010--Hb_000140_190 Hb_002057_010--Hb_007044_070 Hb_001268_330 Hb_001268_330 Hb_002057_010--Hb_001268_330 Hb_000256_100 Hb_000256_100 Hb_002057_010--Hb_000256_100 Hb_004195_240 Hb_004195_240 Hb_148435_010--Hb_004195_240 Hb_035583_010 Hb_035583_010 Hb_148435_010--Hb_035583_010 Hb_000347_550 Hb_000347_550 Hb_148435_010--Hb_000347_550 Hb_061195_010 Hb_061195_010 Hb_148435_010--Hb_061195_010 Hb_148435_010--Hb_000748_070 Hb_000631_130 Hb_000631_130 Hb_007044_070--Hb_000631_130 Hb_025469_040 Hb_025469_040 Hb_007044_070--Hb_025469_040 Hb_131864_020 Hb_131864_020 Hb_007044_070--Hb_131864_020 Hb_001473_100 Hb_001473_100 Hb_007044_070--Hb_001473_100 Hb_007044_070--Hb_001936_030 Hb_142522_030 Hb_142522_030 Hb_007044_070--Hb_142522_030 Hb_000748_070--Hb_004195_240 Hb_004055_180 Hb_004055_180 Hb_000748_070--Hb_004055_180 Hb_000563_610 Hb_000563_610 Hb_000748_070--Hb_000563_610 Hb_000748_070--Hb_001936_030 Hb_000194_080 Hb_000194_080 Hb_000086_730--Hb_000194_080 Hb_003064_010 Hb_003064_010 Hb_000086_730--Hb_003064_010 Hb_080225_010 Hb_080225_010 Hb_000086_730--Hb_080225_010 Hb_000347_530 Hb_000347_530 Hb_000086_730--Hb_000347_530 Hb_000800_060 Hb_000800_060 Hb_000086_730--Hb_000800_060 Hb_000917_330 Hb_000917_330 Hb_001936_030--Hb_000917_330 Hb_000625_130 Hb_000625_130 Hb_001936_030--Hb_000625_130 Hb_002248_020 Hb_002248_020 Hb_001936_030--Hb_002248_020 Hb_001936_030--Hb_025469_040 Hb_004774_060 Hb_004774_060 Hb_001936_030--Hb_004774_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.707493 1.0554 11.0754 7.84643 0.326871 0.016157
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.335953 3.50145 0.368143 74.738 0.750757

CAGE analysis