Hb_002057_010

Information

Type -
Description -
Location Contig2057: 53201-57001
Sequence    

Annotation

kegg
ID rcu:RCOM_0048650
description cinnamoyl-CoA reductase, putative (EC:1.1.1.219)
nr
ID XP_002533435.1
description cinnamoyl-CoA reductase, putative [Ricinus communis]
swissprot
ID Q9S9N9
description Cinnamoyl-CoA reductase 1 OS=Arabidopsis thaliana GN=CCR1 PE=1 SV=1
trembl
ID B9T5B6
description Cinnamoyl-CoA reductase, putative OS=Ricinus communis GN=RCOM_0048650 PE=4 SV=1
Gene Ontology
ID GO:0003854
description cinnamoyl- reductase-related family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21210: 53295-56834
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002057_010 0.0 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
2 Hb_005000_040 0.1155506094 - - ACC oxidase ACCO2 [Manihot esculenta]
3 Hb_000748_070 0.1202087888 transcription factor TF Family: WRKY hypothetical protein POPTR_0005s22480g [Populus trichocarpa]
4 Hb_000140_190 0.1427573128 - - acc synthase, putative [Ricinus communis]
5 Hb_007044_070 0.1688771098 - - PREDICTED: tetraketide alpha-pyrone reductase 1-like [Jatropha curcas]
6 Hb_001268_330 0.169266948 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
7 Hb_000256_100 0.1708343079 transcription factor TF Family: ERF PPLZ02 family protein [Populus trichocarpa]
8 Hb_148435_010 0.1787053786 - - glutathione s-transferase, putative [Ricinus communis]
9 Hb_004195_240 0.1895193648 - - Peroxidase 72 precursor, putative [Ricinus communis]
10 Hb_080225_010 0.1899907408 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
11 Hb_000471_080 0.1973689202 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
12 Hb_029510_110 0.1981698751 - - PREDICTED: protein PLANT CADMIUM RESISTANCE 8-like [Jatropha curcas]
13 Hb_001936_030 0.2000615466 - - PREDICTED: polygalacturonase At1g48100 isoform X1 [Jatropha curcas]
14 Hb_061195_010 0.2013084577 - - Galactose oxidase precursor, putative [Ricinus communis]
15 Hb_025469_040 0.2026990447 - - PREDICTED: acidic mammalian chitinase-like [Jatropha curcas]
16 Hb_131864_020 0.2027069293 - - PREDICTED: anthocyanidin reductase [Jatropha curcas]
17 Hb_003141_020 0.2030082819 - - PREDICTED: chlorophyllase-1-like [Jatropha curcas]
18 Hb_000086_730 0.2045376878 - - PREDICTED: feruloyl CoA ortho-hydroxylase 1-like [Jatropha curcas]
19 Hb_000347_550 0.204689238 transcription factor TF Family: MYB Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]
20 Hb_000230_100 0.2049252906 - - PREDICTED: acyltransferase-like protein At1g54570, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002057_010 Hb_002057_010 Hb_005000_040 Hb_005000_040 Hb_002057_010--Hb_005000_040 Hb_000748_070 Hb_000748_070 Hb_002057_010--Hb_000748_070 Hb_000140_190 Hb_000140_190 Hb_002057_010--Hb_000140_190 Hb_007044_070 Hb_007044_070 Hb_002057_010--Hb_007044_070 Hb_001268_330 Hb_001268_330 Hb_002057_010--Hb_001268_330 Hb_000256_100 Hb_000256_100 Hb_002057_010--Hb_000256_100 Hb_148435_010 Hb_148435_010 Hb_005000_040--Hb_148435_010 Hb_005000_040--Hb_007044_070 Hb_005000_040--Hb_000748_070 Hb_000086_730 Hb_000086_730 Hb_005000_040--Hb_000086_730 Hb_001936_030 Hb_001936_030 Hb_005000_040--Hb_001936_030 Hb_004195_240 Hb_004195_240 Hb_000748_070--Hb_004195_240 Hb_000748_070--Hb_148435_010 Hb_004055_180 Hb_004055_180 Hb_000748_070--Hb_004055_180 Hb_000563_610 Hb_000563_610 Hb_000748_070--Hb_000563_610 Hb_000748_070--Hb_001936_030 Hb_000140_190--Hb_000748_070 Hb_107201_010 Hb_107201_010 Hb_000140_190--Hb_107201_010 Hb_000140_190--Hb_148435_010 Hb_003392_030 Hb_003392_030 Hb_000140_190--Hb_003392_030 Hb_000471_080 Hb_000471_080 Hb_000140_190--Hb_000471_080 Hb_000631_130 Hb_000631_130 Hb_007044_070--Hb_000631_130 Hb_025469_040 Hb_025469_040 Hb_007044_070--Hb_025469_040 Hb_131864_020 Hb_131864_020 Hb_007044_070--Hb_131864_020 Hb_001473_100 Hb_001473_100 Hb_007044_070--Hb_001473_100 Hb_007044_070--Hb_001936_030 Hb_142522_030 Hb_142522_030 Hb_007044_070--Hb_142522_030 Hb_001268_330--Hb_131864_020 Hb_000204_030 Hb_000204_030 Hb_001268_330--Hb_000204_030 Hb_029510_110 Hb_029510_110 Hb_001268_330--Hb_029510_110 Hb_001104_200 Hb_001104_200 Hb_001268_330--Hb_001104_200 Hb_001268_330--Hb_007044_070 Hb_000753_250 Hb_000753_250 Hb_001268_330--Hb_000753_250 Hb_027445_090 Hb_027445_090 Hb_000256_100--Hb_027445_090 Hb_080225_010 Hb_080225_010 Hb_000256_100--Hb_080225_010 Hb_000256_100--Hb_005000_040 Hb_003057_080 Hb_003057_080 Hb_000256_100--Hb_003057_080 Hb_000617_340 Hb_000617_340 Hb_000256_100--Hb_000617_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.898959 9.72311 49.1328 26.3143 0.183473 0.192662
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.81341 25.8065 10.9863 351.3 5.26584

CAGE analysis